| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 125 (4.020) | 58/168 | 0.0 | 82.2% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 54744 | 27 (0.870) | intergenic (‑42/+11) | surA/lptD | peptidylprolyl isomerase SurA/LPS assembly protein LptD | |||||
Only 100 of 155 total aligned reads displayed.
ATTCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGTTGGAGCTCAGGC > NZ_CP009273/54655‑54831 | aTTCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTa < 1:468062/90‑1 (MQ=255) ttCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAg > 2:52686‑M2/1‑89 (MQ=255) ttCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAg > 1:790436‑M2/1‑89 (MQ=255) tCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTaaa > 2:37750/1‑90 (MQ=255) tCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAgg < 2:265960‑M2/90‑3 (MQ=255) gATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATcaa > 1:597270/1‑90 (MQ=255) tCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATcaaca < 1:851749/90‑1 (MQ=255) aTGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgact > 2:409388‑M2/1‑80 (MQ=255) tGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactc > 2:235832‑M2/1‑79 (MQ=255) tGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactc > 1:897208‑M2/1‑79 (MQ=255) tGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactc > 2:658483‑M2/1‑79 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 2:11196‑M2/1‑77 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:66776‑M2/1‑77 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:641754‑M2/1‑77 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 2:870528‑M2/1‑77 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:9706‑M2/1‑77 (MQ=255) gCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 2:102608‑M2/1‑77 (MQ=255) ccgATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:662446‑M2/2‑77 (MQ=255) gATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaac > 1:804173‑M2/1‑75 (MQ=255) gATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaac > 1:118886‑M2/1‑75 (MQ=255) gATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaac < 1:496762‑M2/90‑16 (MQ=255) gATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaac > 1:224791‑M2/1‑75 (MQ=255) gATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaac > 1:227039‑M2/1‑75 (MQ=255) aTACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaact > 2:578146‑M2/1‑74 (MQ=255) tACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaactt < 1:125536‑M2/90‑18 (MQ=255) tACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaactt < 1:190146‑M2/90‑18 (MQ=255) cGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttatt > 1:73477‑M2/1‑70 (MQ=255) gagaAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattg < 1:298496‑M2/90‑22 (MQ=255) gagaAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTACAATTAACCGCACTGCGGATTAGGTGGTAAATCAACAAATCACAAAgtgt > 2:501938/1‑90 (MQ=255) agaAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattga < 2:419856‑M2/90‑23 (MQ=255) gaAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgat > 1:19041‑M2/1‑67 (MQ=255) gaAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactc > 2:876645‑M2/1‑67 (MQ=255) aaGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 1:713757‑M2/1‑66 (MQ=255) aaGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 1:803731‑M2/1‑66 (MQ=255) aaGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 1:101569‑M2/1‑66 (MQ=255) aaGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 1:197795‑M2/1‑66 (MQ=255) aaGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 2:424729‑M2/1‑66 (MQ=255) agcagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatag > 1:552414‑M2/1‑65 (MQ=255) agcagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatag > 2:298496‑M2/1‑65 (MQ=255) agcagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatag > 2:760516‑M2/1‑65 (MQ=255) agcagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatag > 2:568322‑M2/1‑65 (MQ=255) cagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtg > 2:237208‑M2/1‑63 (MQ=255) cagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtg > 1:752351‑M2/1‑63 (MQ=255) cagcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGAt < 2:66659/90‑1 (MQ=255) agcGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAGCCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgt < 1:766619‑M2/90‑29 (MQ=255) cGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttt > 2:135081‑M2/1‑60 (MQ=255) cGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttt > 1:891056‑M2/1‑60 (MQ=255) gTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgtttt < 1:36458‑M2/90‑32 (MQ=255) cAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttc > 1:482640‑M2/1‑53 (MQ=255) cAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttc > 2:377782‑M2/1‑53 (MQ=255) gTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcag < 1:387502‑M2/90‑40 (MQ=255) tcttcATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagat < 1:866956‑M2/90‑42 (MQ=255) tcttcATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTc > 1:810965/1‑90 (MQ=255) cttcATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagata < 1:109017‑M2/90‑43 (MQ=255) tACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACgc > 2:665111/1‑90 (MQ=255) cTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccg < 1:646973‑M2/90‑50 (MQ=255) cTTTTTCCATTTCAATTAACCGCACTACGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccg < 1:118215‑M2/90‑50 (MQ=255) ttttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 2:137352‑M2/90‑52 (MQ=255) ttttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat < 1:525976‑M2/90‑52 (MQ=255) ttttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca < 2:149750‑M2/52‑14 (MQ=255) ttttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:149750‑M2/1‑39 (MQ=255) ttttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACgcagca > 1:286805/1‑90 (MQ=255) tttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatg < 1:839717‑M2/90‑53 (MQ=255) tttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatg > 2:520758‑M2/1‑38 (MQ=255) ttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga < 2:754227‑M2/90‑54 (MQ=255) ttCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatga < 1:255303‑M2/90‑54 (MQ=255) tCCATTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 2:213329‑M2/1‑36 (MQ=255) aTTTCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgacttt < 2:339330‑M2/90‑58 (MQ=255) ttCAATTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgt < 2:596168‑M2/90‑60 (MQ=255) aaTTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcat > 1:102222‑M2/1‑28 (MQ=255) aTTAACCGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatg < 1:235095‑M2/90‑64 (MQ=255) tAACCGCACTGCGGATTACGTGGTAggtaatgactcca > 1:697819‑M2/1‑25 (MQ=255) aCCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAg < 1:419148/90‑1 (MQ=255) ccGCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagct < 2:241283‑M2/90‑69 (MQ=255) gCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc < 2:632619‑M2/90‑71 (MQ=255) gCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc < 2:837461‑M2/90‑71 (MQ=255) gCACTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctcc > 1:701960‑M2/1‑20 (MQ=255) gCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGAcc > 1:172918/1‑90 (MQ=255) cACTGCGGATTACGTGGTAggtaatgactccaacttattgata > 1:456610‑M2/1‑19 (MQ=255) cACTGCGGATTACGTGGTAggtaatgactccaacttattgata < 1:533791‑M2/43‑25 (MQ=255) aCTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac > 2:190146‑M2/1‑18 (MQ=255) aCTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccac > 2:808176‑M2/1‑18 (MQ=255) aCTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttacgttcagataatgcccgatgactttgtcatgcagctccac > 2:725011‑M2/1‑18 (MQ=255) aCTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGt < 1:418288/90‑1 (MQ=255) cTGCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccacc < 2:762014‑M2/90‑74 (MQ=255) cTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTa > 2:594466/1‑90 (MQ=255) tGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAg > 2:35289/1‑90 (MQ=255) gCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccga < 2:899737‑M2/90‑76 (MQ=255) gCGGATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccga < 2:473549‑M2/90‑76 (MQ=255) gCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGt > 2:489899/1‑90 (MQ=255) ggATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgatt < 2:339811‑M2/90‑78 (MQ=255) gATTACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattt < 2:115413‑M2/90‑79 (MQ=255) aTTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGTTGGa < 1:355396/90‑1 (MQ=255) ttACGTGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg < 2:754174‑M2/90‑81 (MQ=255) tGGTAggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaac < 1:91579‑M2/90‑86 (MQ=255) tGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGTTGGAGCTCAg > 2:310846/1‑90 (MQ=255) tGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGTTGGAGCTCAg > 1:567652/1‑90 (MQ=255) gtaggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga > 2:412093‑M2/1‑3 (MQ=255) gtaggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 2:224523‑M2/90‑88 (MQ=255) gtaggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga > 2:147764‑M2/1‑3 (MQ=255) | ATTCGCGATCATGGCGATACCGAGAAGCAGCGTTTTCCAGTTCTTCATACTTTTTCCATTTCAATTAACCGCACTGCGGATTACGTGGTAAATCAACAAATCACAAAGTGTTTTGATACGGCAGAATGTTCGAACGCAGCATCTCTTGCGTACCCAGACCGTAGTTGGAGCTCAGGC > NZ_CP009273/54655‑54831 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |