| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 297400 = | 34 (1.090) | 3 (0.110) | 3/152 | 2.2 | 10.8% | coding (199/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| ? | NZ_CP009273 | 297468 = | 19 (0.680) | coding (131/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTT > NZ_CP009273/297312‑297477 | aGCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGc < 1:325792/90‑1 (MQ=255) gCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGcc < 1:845366/90‑1 (MQ=255) gCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGcc > 1:514626/1‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 2:322097‑M1/83‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 2:418896‑M1/83‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 2:103023‑M1/83‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 1:620477‑M1/83‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 1:814094‑M1/83‑90 (MQ=255) ttagcgctcagcgcgtacccggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 1:643057‑M1/83‑90 (MQ=255) gagTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGt < 1:143239/90‑1 (MQ=255) gagTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGt < 1:174139/90‑1 (MQ=255) agTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTc < 2:198205/90‑1 (MQ=255) cgcgTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTc < 1:130721/90‑1 (MQ=255) aaTCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCt < 1:624375/90‑1 (MQ=255) ggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc > 1:700169‑M1/63‑70 (MQ=255) ggcgcaaaatttatcgcgggcgggaccaatctgctggacctgatgaagctggaaattgaaacGCCCAccc < 2:700169‑M1/8‑1 (MQ=255) aTCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCtt > 2:436252/1‑90 (MQ=255) cgacgCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCg < 1:811268/90‑1 (MQ=255) cgacgCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCg < 2:514626/90‑1 (MQ=255) gacgCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGa > 1:801040/1‑90 (MQ=255) acgcGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCg > 1:234026/1‑90 (MQ=255) cgcTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAgg < 1:71932/90‑1 (MQ=255) cgcTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAgg < 2:801040/90‑1 (MQ=255) cgcTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAgg < 2:234026/90‑1 (MQ=255) ccgccAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACAt < 2:776800/90‑1 (MQ=255) gccAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCg > 2:546678/1‑90 (MQ=255) gccAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCg > 1:444269/1‑90 (MQ=255) gccAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAG‑CCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGa > 2:854811/1‑90 (MQ=255) ggTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATaa < 2:771263/90‑1 (MQ=255) gTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAg < 2:379469/90‑1 (MQ=255) gTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAg < 2:739186/90‑1 (MQ=255) gctggacctgatgaagctggaaattgaaacGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGc > 2:249940‑M1/31‑72 (MQ=255) gctggacctgatgaagctggaaattgaaacGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGc < 1:249940‑M1/42‑1 (MQ=255) ggTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAggtg > 2:79366/1‑90 (MQ=255) ccGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGtgggtggg > 2:523528/1‑90 (MQ=255) aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcaca > 1:136442/1‑66 (MQ=255) aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcaca < 2:136442/66‑1 (MQ=255) aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcac > 1:79443/1‑65 (MQ=255) aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcac < 2:79443/65‑1 (MQ=255) aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCa > 1:717729/1‑90 (MQ=255) gTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCaa > 1:829109/1‑90 (MQ=255) gcgcCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAAtt > 2:525544/1‑90 (MQ=255) ggaaattgaaacGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAAttt < 2:458325‑M1/78‑1 (MQ=255) gcCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcac < 1:196728/60‑1 (MQ=255) gcCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTcac > 2:196728/1‑60 (MQ=255) | AGCAGGGCGCGGGAGAGTACCGCGTAATCACGACGCACGCGCTCGTGAGCCGCCAGGTCGGTGTTCCGTACCAGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTT > NZ_CP009273/297312‑297477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |