| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 297400 = | 34 (1.090) | 3 (0.110) | 3/152 | 2.2 | 10.8% | coding (199/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB |
| ? | NZ_CP009273 | 297468 = | 19 (0.680) | coding (131/957 nt) | paoB | aldehyde oxidoreductase FAD‑binding subunit PaoB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTAA > NZ_CP009273/297384‑297549 | aGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCa > 1:717729/1‑90 (MQ=255) gTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCaa > 1:829109/1‑90 (MQ=255) gcgcCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAAtt > 2:525544/1‑90 (MQ=255) ggaaattgaaacGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAAttt < 2:458325‑M1/78‑1 (MQ=255) aaattgaaacgcccacccaccttatcgatgtgaacggcctcgggctcgataagattgaagtgaccgacgcgggtgggcGTTTCAATTTcc < 2:458325‑M2/12‑1 (MQ=255) CCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAgg > 2:547583‑M1/1‑90 (MQ=255) CACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGt > 1:703105‑M1/1‑90 (MQ=255) gTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCcagc > 2:114755/1‑88 (MQ=255) gTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCcagc < 1:114755/88‑1 (MQ=255) gcctcgggctcgataagattgaagtgaccgacgcgggtgggcGTTTCAATTTCCAGCTTCATCAGGTCcagc < 1:249940‑M2/30‑1 (MQ=255) gcctcgggctcgataagattgaagtgaccgacgcgggtgggcGTTTCAATTTCCAGCTTCATCAGGTCcagc > 2:249940‑M2/43‑72 (MQ=255) gCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAAtt > 1:230626/1‑90 (MQ=255) ccGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAAtttt > 2:446748/1‑90 (MQ=255) ccGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAAtttt > 1:59586/1‑90 (MQ=255) gCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGcc < 1:809935/90‑1 (MQ=255) gCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGcc < 1:64949/90‑1 (MQ=255) gTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCggg > 2:811245/1‑90 (MQ=255) ttCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCcagc < 2:285272/54‑1 (MQ=255) ttCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCcagc > 1:285272/1‑54 (MQ=255) acaTCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTAcg < 1:853917/90‑1 (MQ=255) caTCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTAcgc > 2:573273/1‑90 (MQ=255) tCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGCCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACgcgc < 1:310895/90‑1 (MQ=255) aTAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGa > 1:745818/1‑90 (MQ=255) ggtgggtgGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAgcgc < 2:23348/90‑1 (MQ=255) gtgggtggGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCt > 2:571776/1‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGcc > 1:700169‑M2/9‑70 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGcc < 2:700169‑M2/62‑1 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 2:103023‑M2/9‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 1:814094‑M2/9‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 2:322097‑M2/9‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 2:418896‑M2/9‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 1:643057‑M2/9‑90 (MQ=255) gggtgggcGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTaa > 1:620477‑M2/9‑90 (MQ=255) | AGTGCGCCGATGCGCAGCCCACCCGCGTCGGTCACTTCAATCTTATCGAGCCCGAGGCCGTTCACATCGATAAGGTGGGTGGGCGTTTCAATTTCCAGCTTCATCAGGTCCAGCAGATTGGTCCCGCCCGCGATAAATTTTGCGCCGGGTACGCGCTGAGCGCTAA > NZ_CP009273/297384‑297549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |