Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	993098	993107	10	4 [0]	[0] 2	ssuE/elfA	NADPH‑dependent FMN reductase/fimbrial protein

ATCACGCATATTTATTTATTGGATAGTCATTAGATGTTGAATCA  >  NZ_CP009273/993108‑993151 |                                            atCACGCATATTTATTTATTGGATAGTCATTAGATGTTGAATCa  >  1:339609/1‑44 (MQ=255) atCACGCATATTTATTTATTGGATAGTCATTAGATGTTGAATCa  <  2:339609/44‑1 (MQ=255) |                                            ATCACGCATATTTATTTATTGGATAGTCATTAGATGTTGAATCA  >  NZ_CP009273/993108‑993151

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑