| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 283583 | 7 (0.230) | 3 (0.110) | 3/154 | 2.3 | 20.4% | coding (1084/1611 nt) | yagH | glycoside hydrolase family 43 protein |
| ? | NZ_CP009273 | = 283644 | 17 (0.620) | coding (1145/1611 nt) | yagH | glycoside hydrolase family 43 protein | |||||
GACGATTTCGACGCCAGTTCGCTTGACCCGGAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGC > NZ_CP009273/283496‑283668 | gACGATTTCGACGCCAGTTCGCTTGACCCGGAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCg < 2:686526/90‑1 (MQ=255)gACGATTTCGACGCCAGTTCGCTTGACCCGGAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCg < 2:763837/90‑1 (MQ=255) aCGCCAGTTCGCTTGACCCGGAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTAc < 1:185593/90‑1 (MQ=255) ggAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTc > 1:823844/1‑90 (MQ=255) tGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCa > 1:344259/1‑90 (MQ=255) gCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCacggtcgattgggggaaggtcgaattgagcgagtcgt > 1:81927‑M1/1‑53 (MQ=255) gCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCaa > 1:8059/1‑90 (MQ=255) gCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCaa > 2:76864/1‑90 (MQ=255) cgacACCCTCGGCTCGCTCACCGCGCGCCacggtcgattgggtgaaggtcgaattgagcgagtcgttgccatagagccgtaagaagcccg > 1:781877‑M1/1‑29 (MQ=255) cccTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTggcgc > 2:281860‑M2/1‑85 (MQ=255) cTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTggcgcgc < 1:718761‑M2/90‑8 (MQ=255) cgctcCCCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGCCCCGCTCAATTCGGCCTTCCCCCAATCGACCGTggcgcgcggtgagc > 2:8059‑M2/1‑76 (MQ=255) gctcACCGCGCGCCacggtcgattgggggaaggccgaattgagcggggcgttgccatagagccgtaagaagcccgggcgcgcggggagcg > 2:8059‑M1/1‑14 (MQ=255) gcgcgcCacggtcgattgggtgaaggtcgaattgagcgagtcgttgccatagagccgtaagaagcccgggcgcgcggtgagcgagccgag < 1:718761‑M1/90‑84 (MQ=255) gcgcCacggtcgattgggtgaaggtcgaattgagcgagtcgttgccatagagccgtaagaagcccgggcgcgcggtgagcgagccgaggg > 2:281860‑M1/1‑5 (MQ=255) | GACGATTTCGACGCCAGTTCGCTTGACCCGGAGCTGCAGACCCTGCGCATTCCGTTCGACGACACCCTCGGCTCGCTCACCGCGCGCCCGGGCTTCTTACGGCTCTATGGCAACGACTCGCTCAATTCGACCTTCACCCAATCGACCGTGGCGCGCCGCTGGCAGCACTTCGC > NZ_CP009273/283496‑283668 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |