New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 2845472	15 (0.690)	3 (0.150)	3/154	1.6	12.9%	coding (250/273 nt)	hypC	hydrogenase 3 maturation protein HypC
	?	NZ_CP009273	= 2845516	27 (1.370)					coding (22/1122 nt)	hypD	hydrogenase formation protein HypD
Rejected: Frequency below/above cutoff threshold.

GGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/2845379‑2845472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcgcGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGACATCCGGCTCAACGTCAAACATGTTTTGTAAGGCG  <  NZ_CP009273/2845516‑2845429                                                                                                                                                                                        GGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGC                                                                                              >  2:160949/1‑90                                AAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC                                                                                          <  1:547564/63‑1                                AAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC                                                                                          >  2:547564/1‑63                                              CTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACA                                                 >  2:258632/1‑90                                                       TTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGC                                        <  1:450638/90‑1                                                                      GACGTTGAGCCGGATGTCGGCGCGCGATATTCATCAACAAAAAGCAGTATTTTTCCTCGCCATCCAACAGCGCGCCGGCATCCGGCTCAA                         >  1:522252/1‑90                                                                                          CGCGCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGACATCCGGCTCAACGTCAAACATGTTTTGTAAG     <  1:554070/90‑1                                                                                             GCGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGACATCCGGCTCAACGTCAAACATGTTTTGTAAGGCG  >  1:410880/1‑90                                                                                                                                                                                        GGCTTTGCCATGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/2845379‑2845472 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcgcGATATTCATCAACAAAACGCATTATTTTTCCTCGCCATACAACAGCGCGCCGACATCCGGCTCAACGTCAAACATGTTTTGTAAGGCG  <  NZ_CP009273/2845516‑2845429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.