New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 2845472	15 (0.690)	3 (0.150)	3/154	1.6	12.9%	coding (250/273 nt)	hypC	hydrogenase 3 maturation protein HypC
	?	NZ_CP009273	= 2845516	27 (1.370)					coding (22/1122 nt)	hypD	hydrogenase formation protein HypD
Rejected: Frequency below/above cutoff threshold.

TGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAA  >  NZ_CP009273/2845389‑2845560                                                                                    |                                                                                         tGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCtgttgt                                                                                    >  1:484876/1‑90 (MQ=255)      gTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGc                                                                               <  2:454312/90‑1 (MQ=255)             atGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGaaa                                                                        <  1:436266/90‑1 (MQ=255)                    cGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATg                                                                 <  2:164497/90‑1 (MQ=255)                      aaGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC                                                                                          >  2:547564‑M1/1‑63 (MQ=255)                      aaGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGC                                                                                          <  1:547564‑M1/63‑1 (MQ=255)                                    ctcGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccataca                                                 >  2:258632‑M1/1‑49 (MQ=255)                                     tcGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAata                                                >  1:346298/1‑90 (MQ=255)                                         cGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgc                                            >  1:410880‑M2/1‑88 (MQ=255)                                            cTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcg                                         <  1:554070‑M2/90‑6 (MQ=255)                                             ttACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgc                                        <  1:450638‑M1/90‑51 (MQ=255)                                                  aaaCATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGaa                                   <  2:170923/90‑1 (MQ=255)                                                          ttGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGAt                           >  2:248321/1‑90 (MQ=255)                                                           tGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATg                          <  2:346298/90‑1 (MQ=255)                                                            gACGTTGAGCCGGATGTCGGCGCGCgatattcatcaacaaaaagcagtatttttcctcgccatccaacagcgcgccggcatccggctcaa                         >  1:522252‑M1/1‑25 (MQ=255)                                                                ttGAGCCGGATGCCGGCGCGCTGTTGGATGGCGAGGAAAAATACTGCTTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtc                     >  1:522252‑M2/1‑65 (MQ=255)                                                                          ttccGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCAt           >  2:185250/4‑90 (MQ=255)                                                                              ggCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTgc       >  2:157041/1‑90 (MQ=255)                                                                               gcgcgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCgcgcgccgacatccggctcaacgtcaaacatgttttgtaa      <  1:450638‑M2/90‑41 (MQ=255)                                                                                cgcgcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccggctcaacgtcaaacatgttttgtaag     <  1:554070‑M1/90‑86 (MQ=255)                                                                                 gcgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGcgcg    >  2:163963/1‑90 (MQ=255)                                                                                 gcgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGcgcg    >  2:294346/1‑90 (MQ=255)                                                                                  cgcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGa   >  2:182901/1‑90 (MQ=255)                                                                                   gcgatattcatcaacaaaacgcattatttttcctcgccatacaacagcgcgccgacatccggctcaacgtcaaacatgttttgtaaggcg  >  1:410880‑M1/1‑2 (MQ=255)                                                                                   gcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGaa  >  2:201048/1‑90 (MQ=255)                                                                                   gcTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGaa  <  1:143158/90‑1 (MQ=255)                                                                                    |                                                                                         TGAGCGTAATTAATGAAGCCGAAGCACGCGACACTCTCGACGCCTTACAAAACATGTTTGACGTTGAGCCGGATGTCGGCGCGCTGTTGTATGGCGAGGAAAAATAATGCGTTTTGTTGATGAATATCGCGCGCCGGAACAGGTGATGCAGTTAATTGAGCATCTGCGCGAA  >  NZ_CP009273/2845389‑2845560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.