Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	997227	997228	2	2 [1]	[0] 3	elfC	fimbrial biogenesis usher protein

GGCGGGTTTACCGGCGAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGAACAA  >  NZ_CP009273/997137‑997227                                                                                          |  ggCGGGTTTACCGGCGAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGaaca   <  1:71431/90‑1 (MQ=255)  gCGGGTTTACCGGCGGAGGGAACAATAAGCGCGGGCTGGGGGGAAGCCCCCGGTCCAATTTGTCATATCAAATACGGGCTTACCGaacaa  >  1:253165/1‑90 (MQ=255)                                                                                          |  GGCGGGTTTACCGGCGAAGGGAACAATAAGCGTGCGCTGGGGCGAAGCTCCCGATCAAATTTGTCATATCAATTACGAGCTTACCGAACAA  >  NZ_CP009273/997137‑997227

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑