Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	997227	997228	2	2 [1]	[0] 3	elfC	fimbrial biogenesis usher protein

AAATTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAATCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTGCCGC  >  NZ_CP009273/997229‑997318 |                                                                                          aaaTTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAATCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTgccgc  <  1:15181/90‑1 (MQ=255) aaaTTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAATCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTgccgc  <  1:64531/90‑1 (MQ=255) aaaTTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAATCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTgccgc  <  2:324686/90‑1 (MQ=255) |                                                                                          AAATTAACTCTGCGATTACGCGAATGGATGCCATATGCAGATAATCTTTGGAGAAAAATGCGTGTCATTACTACGACTATTTTTTGCCGC  >  NZ_CP009273/997229‑997318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑