| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2442890 = | 27 (0.900) | 3 (0.100) | 3/162 | 2.1 | 10.2% | coding (639/822 nt) | yfcO | fimbrial adhesin YfcO |
| ? | NZ_CP009273 | 2442931 = | 27 (0.930) | coding (598/822 nt) | yfcO | fimbrial adhesin YfcO | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGGTTGAGAAAACGCTTTCAACGTATTTGATGAAAGATGGGAAGTTGTGCGACAGTACGCAGATGAATGAAACAGGTGGTTACTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2442979‑2442890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT > NZ_CP009273/2442931‑2443018 GTGGTTGAGAAAACGCTTTCAACGTATTTGATGAAAGATGGGAAGTTGTGCGACAGTACGCAGATGAATGAAACAGGTGGTTACTGCCGC < 1:246976/90‑1GTGGTTGAGAAAACGCTTTCAACGTATTTGATGAAAGATGGGAAGTTGTGCGACAGTACGCAGATGAATGAAACAGGTGGTTACTGCCGC < 2:418950/90‑1 GAATGAAACAGGTGGTTACTGCCGCACAACTTCCCATCTTTCATCAAAT < 1:345912/49‑1 GAATGAAACAGGTGGTTACTGCCGCACAACTTCCCATCTTTCATCAAAT > 2:345912/1‑49 cgTACTGCCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTT < 2:410725/88‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT < 1:55333/90‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT < 1:60211/90‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT < 1:764763/90‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT > 2:385537/1‑90 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT < 2:696041/90‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAG > 1:246277/1‑75 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAG < 2:246277/75‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTC > 1:594158/1‑43 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTC < 2:594158/43‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGT < 1:71133/39‑1 GCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGT > 2:71133/1‑39 GTGGTTGAGAAAACGCTTTCAACGTATTTGATGAAAGATGGGAAGTTGTGCGACAGTACGCAGATGAATGAAACAGGTGGTTACTGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2442979‑2442890‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCACACCGCCCGTCGACTGCAGGGTGAGCAGTTTTGACTTACT > NZ_CP009273/2442931‑2443018 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |