| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2442890 = | 27 (0.900) | 3 (0.100) | 3/162 | 2.1 | 10.2% | coding (639/822 nt) | yfcO | fimbrial adhesin YfcO |
| ? | NZ_CP009273 | 2442931 = | 27 (0.930) | coding (598/822 nt) | yfcO | fimbrial adhesin YfcO | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGTCCGTTATAGGGTGTCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCAC > NZ_CP009273/2442802‑2442979 | tGTCCGTTATAGGGTGTCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGc > 2:160739/1‑90 (MQ=255)tGTCCGTTATAGGGTGTCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGc < 1:823694/90‑1 (MQ=255)agtaagtcaaaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 2:696041‑M1/2‑1 (MQ=255)agtaagtcaaaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 1:764763‑M1/2‑1 (MQ=255)agtaagtcaaaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc > 2:385537‑M1/89‑90 (MQ=255)agtaagtcaaaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 1:55333‑M1/2‑1 (MQ=255)agtaagtcaaaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 1:60211‑M1/2‑1 (MQ=255) gTTATAGGGTGTCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAg > 1:839883/1‑90 (MQ=255) aaactgctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGCGGCAgtacg < 2:410725‑M1/11‑3 (MQ=255) tgtCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCt > 2:473532/1‑90 (MQ=255) tgtCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCt > 2:140621/1‑90 (MQ=255) tgtCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCt > 2:748930/1‑90 (MQ=255) gtCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTg > 1:592488/1‑90 (MQ=255) gtCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTg > 1:800859/1‑90 (MQ=255) ctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 2:246277‑M1/2‑1 (MQ=255) ctcaccctgcagtcgacgggcggtgtggttgagaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc > 1:246277‑M1/74‑75 (MQ=255) tCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGt < 2:592709/90‑1 (MQ=255) tttGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTttca > 1:408002/1‑90 (MQ=255) ggCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTttcattc < 1:140621/90‑1 (MQ=255) gACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTg > 2:613248/1‑90 (MQ=255) gACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTg > 2:731335/1‑90 (MQ=255) ccGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGc > 2:858240/1‑90 (MQ=255) ccGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGc < 1:829921/90‑1 (MQ=255) cTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACaa < 2:839883/90‑1 (MQ=255) gaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc < 2:594158‑M1/2‑1 (MQ=255) gaaaacgctttcaacgtatttgatgaaagatgggaagttgtGc > 1:594158‑M1/42‑43 (MQ=255) acgctttcaacgtatttgatgaaagatgggaagttgtGc < 1:71133‑M1/2‑1 (MQ=255) acgctttcaacgtatttgatgaaagatgggaagttgtGc > 2:71133‑M1/38‑39 (MQ=255) gACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTtc > 1:22374/1‑90 (MQ=255) cgGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTtcatca > 2:699742/1‑90 (MQ=255) atttgatgaaagatgggaagttgtGCGGCAGTAACCACCTGTttcattc < 1:345912‑M1/25‑1 (MQ=255) atttgatgaaagatgggaagttgtGCGGCAGTAACCACCTGTttcattc > 2:345912‑M1/25‑49 (MQ=255) tATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATc < 2:509722/46‑1 (MQ=255) tATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATc > 1:509722/1‑46 (MQ=255) tATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGa > 1:98988/1‑90 (MQ=255) tgtgCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGtt > 1:358180/1‑90 (MQ=255) gtgCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGttt > 2:618495/1‑90 (MQ=255) gtgCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGttt > 1:619256/1‑90 (MQ=255) aCCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCttt < 2:413050/62‑1 (MQ=255) aCCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCttt > 1:413050/1‑62 (MQ=255) cAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAAcc > 2:589906/1‑90 (MQ=255) GCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACcac < 2:418950‑M1/90‑1 (MQ=255) GCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACcac < 1:246976‑M1/90‑1 (MQ=255) | TGTCCGTTATAGGGTGTCGATTTGGCGTGACCGAGACTTCCGCCTTGTCACATCCCGACGCGGTAAAAGTTATCATCTGTGCAACCCAGCGGCAGTAACCACCTGTTTCATTCATCTGCGTACTGTCGCACAACTTCCCATCTTTCATCAAATACGTTGAAAGCGTTTTCTCAACCAC > NZ_CP009273/2442802‑2442979 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |