| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3248600 = | 22 (0.730) | 4 (0.150) | 4/148 | 1.7 | 19.3% | intergenic (+34/+100) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase |
| ? | NZ_CP009273 | 3248653 = | 14 (0.530) | intergenic (+87/+47) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAT > NZ_CP009273/3248512‑3248683 | aGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATc < 2:749792/90‑1 (MQ=255) tcggcagattatcgagattatggcgagcaaggccagataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgTcc > 1:536738‑M1/88‑90 (MQ=255) tcggcagattatcgagattatggcgagcaaggccagataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgTcc > 1:86569‑M1/88‑90 (MQ=255) tcggcagattatcgagattatggcgagcaaggccagataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgTcc > 2:253702‑M1/88‑90 (MQ=255) tATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCgg > 2:311664/1‑90 (MQ=255) gattatcgagattatggcgagcaaggccagataaacgccaggttttggggatcgtgccggatgcgatgctggcgcatcttgTCTGGCCTa > 2:443437‑M1/82‑90 (MQ=255) cgcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACa < 2:134634/90‑1 (MQ=255) gcgGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACaa < 1:130396/90‑1 (MQ=255) cTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaa < 2:404366/90‑1 (MQ=255) tGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCcaac < 1:594638/90‑1 (MQ=255) gTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTaa < 2:131623/90‑1 (MQ=255) gccagataaacgccaggttttggggatagtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAACGAAtt < 2:581561‑M1/34‑1 (MQ=255) gAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTaa < 2:558615/90‑1 (MQ=255) gATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca < 2:849549/90‑1 (MQ=255) gATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca < 2:769281/90‑1 (MQ=255) aTGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaacaa < 1:633021/90‑1 (MQ=255) gAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAAcc > 2:288209/1‑90 (MQ=255) ggttttggggatcgtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGc < 2:645363‑M1/49‑1 (MQ=255) gcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc > 1:846149/1‑46 (MQ=255) gcgTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGcc < 2:846149/46‑1 (MQ=255) atcgtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt < 1:716748‑M1/59‑1 (MQ=255) aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgc > 2:729710/1‑90 (MQ=255) gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcgc > 1:320687/1‑90 (MQ=255) ttGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc < 2:704560/90‑1 (MQ=255) tGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa < 2:77061/90‑1 (MQ=255) gCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg < 2:847056/90‑1 (MQ=255) ccGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc > 2:423816/1‑90 (MQ=255) ggATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca > 2:179921/1‑60 (MQ=255) ggATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAaaca < 1:179921/60‑1 (MQ=255) atcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAt < 2:531031‑M1/84‑1 (MQ=255) | AGCTATCGTCGCGGATGCTGAAACGCGTTTAGCCGAGGATGAAGCTACCGCGTAAAGACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAT > NZ_CP009273/3248512‑3248683 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |