| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3248600 = | 22 (0.730) | 4 (0.150) | 4/148 | 1.7 | 19.3% | intergenic (+34/+100) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase |
| ? | NZ_CP009273 | 3248653 = | 14 (0.530) | intergenic (+87/+47) | BW25113_RS16135/cyuA | hypothetical protein/cysteine desulfidase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGA > NZ_CP009273/3248569‑3248739 | atcgtgccggatgcgatgctggcgcatcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtaggccggaCAAGAt < 2:531031‑M2/6‑1 (MQ=255)atcgtgccggatgcgatgctggcgcatcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGAt < 1:716748‑M1/59‑1 (MQ=255) aGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgc > 2:729710/1‑90 (MQ=255) gTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATgcgc > 1:320687/1‑90 (MQ=255) ttGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGcc < 2:704560/90‑1 (MQ=255) tGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCa < 2:77061/90‑1 (MQ=255) gCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAg < 2:847056/90‑1 (MQ=255) ccGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAgc > 2:423816/1‑90 (MQ=255) atcttgtccggcctacgggttgtttaattcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGAt < 1:716748‑M2/31‑1 (MQ=255) atcttgTCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGAt < 2:531031‑M1/84‑1 (MQ=255) gcctacgggttgtttaattcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAcc < 2:645363‑M2/41‑1 (MQ=255) GCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAAcc < 2:240502‑M1/90‑1 (MQ=255) acaacaTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTgg > 2:518110/1‑90 (MQ=255) aattcgttaatgttgttggattttgtaggccggaCAAGATGCGCCAGCATCGCATCCGGCACTATCCCCAAAACCTGGCGTTTATCTGGc < 2:581561‑M2/56‑1 (MQ=255) aTTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCttc > 1:474729/1‑89 (MQ=255) cGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGc > 1:194816/1‑90 (MQ=255) aTTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCAt > 1:190794/1‑90 (MQ=255) aTTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCAt > 2:96401/1‑90 (MQ=255) aTTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCAt > 1:521517/1‑90 (MQ=255) acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGa > 2:338367/1‑90 (MQ=255) acCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGa > 1:273937/1‑90 (MQ=255) taggccagaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATc > 2:443437‑M2/10‑90 (MQ=255) ggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGa > 2:253702‑M2/4‑90 (MQ=255) ggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGa > 1:86569‑M2/4‑90 (MQ=255) ggaCAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGa > 1:536738‑M2/4‑90 (MQ=255) | ACAGGTTGCCGGATGCGGCGAAAACGCCTTATCCGGCCTACAAAATCCAACAACATTAACGAATTAAACAACCCGTAGGCCGGACAAGATGCGCCAGCATCGCATCCGGCACGATCCCCAAAACCTGGCGTTTATCTGGCCTTGCTCGCCATAATCTCGATAATCTGCCGA > NZ_CP009273/3248569‑3248739 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |