New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3401657	78 (1.910)	3 (0.070)	3/166	2.8	3.6%	coding (692/1452 nt)	panF	sodium/pantothenate symporter
	?	NZ_CP009273	= 3401664	82 (2.010)					coding (699/1452 nt)	panF	sodium/pantothenate symporter
Rejected: Frequency below/above cutoff threshold.

TTACGCCACAAGGCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3401639‑3401657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATATCGTCAGCGCCTTGTGGCGTAACCAGTTGCGGATCGATGGTTTGCAAGGTCTGTACTGCGTTACTTAAGCCGCCAGCGGCAT  <  NZ_CP009273/3401664‑3401579                                                                                                           TTACGCCACAAGGCGCTGAAATATCGTCAGCGCCTTGTGGCGTAACCAGTTGCGGATCGATGGTTTGCA                                      >  1:777507/1‑69 TTACGCCACAAGGCGCTGAAATATCGTCAGCGCCTTGTGGCGTAACCAGTTGCGGATCGATGGTTTGCA                                      <  2:777507/69‑1                acaAAATATCGTCAGCGCCTTGTGGCGTAACCAGTTGCGGATCGATGGTTTGCAAGGTCTGTACTGCGTTACTTAAGCCGCCAGCGGCAT  <  1:126531/87‑1                                                                                                           TTACGCCACAAGGCGCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3401639‑3401657 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATATCGTCAGCGCCTTGTGGCGTAACCAGTTGCGGATCGATGGTTTGCAAGGTCTGTACTGCGTTACTTAAGCCGCCAGCGGCAT  <  NZ_CP009273/3401664‑3401579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.