| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 303074 | 21 (1.020) | 4 (0.210) | 3/154 | 1.6 | 16.3% | coding (1970/2526 nt) | ecpC | fimbrial usher EcpC |
| ? | NZ_CP009273 | = 303087 | 22 (1.180) | coding (1957/2526 nt) | ecpC | fimbrial usher EcpC | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGT > NZ_CP009273/302988‑303162 | cGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCaa < 1:411267/90‑1 (MQ=255)cGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCaa < 1:131635/90‑1 (MQ=255)cGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCaa < 1:408026/90‑1 (MQ=255)cGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCaa < 2:274437/90‑1 (MQ=255) cTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgc > 2:44005‑M2/1‑86 (MQ=255) cTGACCGTCGTCCTCCAGCCCGTTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGcc < 1:434103/90‑1 (MQ=255) cgtcgtCCTCCGGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGc < 2:334450/90‑1 (MQ=255) tcgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTg > 1:303070/1‑90 (MQ=255) ctccAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatg < 2:505409‑M2/90‑22 (MQ=255) gCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCgg > 1:480143/1‑90 (MQ=255) cGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgct > 2:191610‑M1/1‑48 (MQ=255) ggTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCaa < 2:14816/90‑1 (MQ=255) gtgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctgg > 1:541028‑M2/1‑59 (MQ=255) gtgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctgg > 1:505409‑M2/1‑59 (MQ=255) gAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAggtggt > 1:363270/1‑90 (MQ=255) tCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGa > 1:178589/1‑90 (MQ=255) ccccAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGt < 2:142962/90‑1 (MQ=255) ccAGCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacac > 1:541028‑M1/1‑31 (MQ=255) ccAGCGTTGCCATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacac > 1:505409‑M1/1‑31 (MQ=255) aGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctggggtgatattcaacaccg > 2:191610‑M2/1‑42 (MQ=255) aGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGcc > 2:250730/1‑90 (MQ=255) ttGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTTAAGTAGCCGGcc > 2:516040/1‑90 (MQ=255) ccATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgcc < 2:302043/90‑1 (MQ=255) cATCAGTCCGCCCGCTGGCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacaccgggctggag < 2:505409‑M1/90‑70 (MQ=255) aTCAGTCCGCCCGCTGGCAGCAATGTTTTTCCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCcgccgc < 1:488753/90‑1 (MQ=255) cAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGAATTGACGTAGCCGTCCGCCgcgc > 2:217235/1‑90 (MQ=255) cggcTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACg > 2:527331/3‑90 (MQ=255) cTGGCAGCAATGTTTTTCCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGACCGCCGCGCTATTGACGTTc < 1:93502/90‑1 (MQ=255) gcagcaATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGc < 1:86431/90‑1 (MQ=255) gCAGggtaaaaacattgctgccagcgggcggactgatggcaacgctggggtgatattcaacaccgggctggaggacgacggtcagatcag > 2:44005‑M1/1‑4 (MQ=255) agcaATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGt < 2:143596/90‑1 (MQ=255) | CGTTGATTTTGGCGCTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGT > NZ_CP009273/302988‑303162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |