New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 303074	21 (1.020)	4 (0.210)	3/154	1.6	16.3%	coding (1970/2526 nt)	ecpC	fimbrial usher EcpC
	?	NZ_CP009273	= 303087	22 (1.180)					coding (1957/2526 nt)	ecpC	fimbrial usher EcpC
Rejected: Frequency below/above cutoff threshold.

CTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGT  >  NZ_CP009273/303002‑303173                                                                                      |                                                                                       cTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgc                                                                                    >  2:44005‑M2/1‑86 (MQ=255)      cTGACCGTCGTCCTCCAGCCCGTTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGcc                                                                               <  1:434103/90‑1 (MQ=255)           cgtcgtCCTCCGGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGc                                                                          <  2:334450/90‑1 (MQ=255)             tcgtcCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTg                                                                        >  1:303070/1‑90 (MQ=255)                  ctccAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatg                                                                   <  2:505409‑M2/90‑22 (MQ=255)                       gCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCgg                                                              >  1:480143/1‑90 (MQ=255)                           ggTGTTGAATATCCCCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCaa                                                          <  2:14816/90‑1 (MQ=255)                            gtgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctgg                                                         >  1:505409‑M2/1‑59 (MQ=255)                            gtgtTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctgg                                                         >  1:541028‑M2/1‑59 (MQ=255)                                 gAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAggtggt                                                    >  1:363270/1‑90 (MQ=255)                                      tCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGa                                               >  1:178589/1‑90 (MQ=255)                                         ccccAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGt                                            <  2:142962/90‑1 (MQ=255)                                             aGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCctgccagcgggcggactgatggcaacgctggggtgatattcaacaccg                                        >  2:191610‑M2/1‑42 (MQ=255)                                             aGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGcc                                        >  2:250730/1‑90 (MQ=255)                                                 ttGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTTAAGTAGCCGGcc                                    >  2:516040/1‑90 (MQ=255)                                                    ccATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTccgcc                                 <  2:302043/90‑1 (MQ=255)                                                      aTCAGTCCGCCCGCTGGCAGCAATGTTTTTCCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCcgccgc                               <  1:488753/90‑1 (MQ=255)                                                        cAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGAATTGACGTAGCCGTCCGCCgcgc                             >  2:217235/1‑90 (MQ=255)                                                                cggcTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACg                     >  2:527331/3‑90 (MQ=255)                                                                   cTGGCAGCAATGTTTTTCCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGACCGCCGCGCTATTGACGTTc                  <  1:93502/90‑1 (MQ=255)                                                                      gcagcaATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGc               <  1:86431/90‑1 (MQ=255)                                                                        agcaATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGt             <  2:143596/90‑1 (MQ=255)                                                                             tGTTTTTCCCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGc        <  1:165772/90‑1 (MQ=255)                                                                             tGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGc        <  1:80465/90‑1 (MQ=255)                                                                             tGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGc        <  2:557230/90‑1 (MQ=255)                                                                                  ttACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCg   <  2:95209/90‑1 (MQ=255)                                                                                   tACCCTGCCAGCCGACGCTGCCATGGGCGGTCAAGTTGGGATTGACGTAGCCGTCCGCCGCGCTATTTACGTTCAGCGTCCCGCTGGCGt  >  1:282588/1‑90 (MQ=255)                                                                                      |                                                                                       CTGATCTGACCGTCGTCCTCCAGCCCGGTGTTGAATATCACCCCAGCGTTGCCATCAGTCCGCCCGCTGGCAGCAATGTTTTTACCCTGCCAGCCGACGCTGCCATTGGCGGTCAAGTTGGTATTGACGTAGCCGTCCGCCGCGCTATTGACGTTCAGCGTTCCGCTGGCGT  >  NZ_CP009273/303002‑303173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.