New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2279605 =	18 (0.870)	4 (0.230)	3/144	1.5	24.8%	coding (1751/1761 nt)	yejM	LPS biosynthesis‑modulating metalloenzyme YejM
	?	NZ_CP009273	2279638 =	9 (0.520)					intergenic (+23/‑52)	yejM/BW25113_RS11425	LPS biosynthesis‑modulating metalloenzyme YejM/tRNA‑Pro

TACAACTTACGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTC  >  NZ_CP009273/2279520‑2279690                                                                                      |                                                                                      tACAACTTACGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCt                                                                                   >  2:312054/1‑90 (MQ=255) tACAACTTACGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCt                                                                                   >  1:431643/1‑90 (MQ=255)  gacggtgcgctaccaggctgcgctacgtgccgactcgtggctgctaatactaccgttttccacaccgattgcaagtaagatattTCGCTa                                                                                  >  2:293267‑M1/85‑90 (MQ=255)    cggtgcgctaccaggctgcgctacgtgccggctcgtggctgctaatactaccgttttccacaccgattgcaagtaagatattTCGCTAAc                                                                                >  1:188492‑M1/83‑90 (MQ=255)         aCGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGatt                                                                           <  2:563365/90‑1 (MQ=255)          cGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGatta                                                                          <  1:42043/90‑1 (MQ=255)          cGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGatta                                                                          <  1:371250/90‑1 (MQ=255)          cGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGatta                                                                          <  2:456776/90‑1 (MQ=255)             ggtgAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGattaatt                                                                       >  2:360355/1‑90 (MQ=255)               tgaaagagtgaaagaTGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATtat                                                                     >  1:454509/1‑90 (MQ=255)                gaaagagtgaaagaTGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATtata                                                                    >  1:412395/1‑90 (MQ=255)                        gaaagaTGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGtt                                                            >  2:343790/1‑90 (MQ=255)                              tGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaa                                                      >  2:491624/1‑90 (MQ=255)                                        caGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt                                            >  2:128475/1‑90 (MQ=255)                                               gTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATc                                     <  1:567508/90‑1 (MQ=255)                                                  tGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt                                  >  2:555756/1‑90 (MQ=255)                                                        gttttccacaccgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaa                            <  2:437214‑M1/60‑1 (MQ=255)                                                          tttccacaccgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaaa                          <  2:169761‑M1/62‑1 (MQ=255)                                                             gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg                       <  1:186964/90‑1 (MQ=255)                                                             gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg                       <  1:312054/90‑1 (MQ=255)                                                                    gattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAtt                <  2:245308‑M1/72‑1 (MQ=255)                                                                    gattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAtt                <  2:144541‑M1/72‑1 (MQ=255)                                                                                gTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg    >  1:218597/1‑90 (MQ=255)                                                                                  tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTc  <  1:343790/90‑1 (MQ=255)                                                                                      |                                                                                      TACAACTTACGTGGTGAAAGAGTGAAAGATGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTC  >  NZ_CP009273/2279520‑2279690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.