New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	2279605 =	18 (0.870)	4 (0.230)	3/144	1.5	24.8%	coding (1751/1761 nt)	yejM	LPS biosynthesis‑modulating metalloenzyme YejM
	?	NZ_CP009273	2279638 =	9 (0.520)					intergenic (+23/‑52)	yejM/BW25113_RS11425	LPS biosynthesis‑modulating metalloenzyme YejM/tRNA‑Pro

TGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTC  >  NZ_CP009273/2279549‑2279721                                                                                          |                                                                                    tGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGaa                                                                                     >  2:491624/1‑90 (MQ=255)           caGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACt                                                                           >  2:128475/1‑90 (MQ=255)                  gTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATc                                                                    <  1:567508/90‑1 (MQ=255)                  aatactaccgttttccacaccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATc                                                                    <  2:144541‑M2/18‑1 (MQ=255)                  aatactaccgttttccacaccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATc                                                                    <  2:245308‑M2/18‑1 (MQ=255)                     tGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGgt                                                                 >  2:555756/1‑90 (MQ=255)                           gttttccacaccgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaa                                                           <  2:437214‑M1/60‑1 (MQ=255)                            ttttccacaccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGGTGTGGaaa                                                          <  2:169761‑M2/28‑1 (MQ=255)                             tttccacaccgattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGaaaa                                                         <  2:169761‑M1/62‑1 (MQ=255)                              ttccacaccgattgcaagtaagatatttcgctaactgatttataattaatcagttagcgaAATATCTTACTTGCAATCGGTGTGGAAAAc                                                        <  2:437214‑M2/30‑1 (MQ=255)                                gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg                                                      <  1:312054/90‑1 (MQ=255)                                gTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACgg                                                      <  1:186964/90‑1 (MQ=255)                                       gattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAtt                                               <  2:245308‑M1/72‑1 (MQ=255)                                       gattgcaagtaagatattTCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTAtt                                               <  2:144541‑M1/72‑1 (MQ=255)                                                   gTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAg                                   >  1:218597/1‑90 (MQ=255)                                                     tttATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTc                                 <  1:343790/90‑1 (MQ=255)                                                             TAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTa                         <  2:26521‑M1/90‑1 (MQ=255)                                                                 TGATTAATTATAAATCCGTTAGGGAAATATCTTGCTTGCAATCGGTGCGGAAAACGGTAGTTTTAGCAGCCACGAGTCGGCACGTAgcgc                     >  2:454509‑M1/1‑90 (MQ=255)                                                                  GATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCa                    <  2:337543‑M1/90‑1 (MQ=255)                                                                      aattaTAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTCTTAGCAGCCACGAGTCGGCACGTAGCGCAGCCt                >  2:473767/1‑90 (MQ=255)                                                                                  gttagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGCCGGCACGTAGCGCAGCCTGGTAGCGCACCg    >  1:188492‑M2/9‑90 (MQ=255)                                                                                    tagcgaAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTc  >  2:293267‑M2/7‑90 (MQ=255)                                                                                          |                                                                                    TGAAAAACCACAGTTAAGTTTGTTATTGCAAGTGCTGACAGACGAGAAGCGTTTTATCGCTAACTGATTAATTATAAATCAGTTAGCGAAATATCTTACTTGCAATCGGTGTGGAAAACGGTAGTATTAGCAGCCACGAGTCGGCACGTAGCGCAGCCTGGTAGCGCACCGTC  >  NZ_CP009273/2279549‑2279721

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.