| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3015939 | 23 (1.120) | 4 (0.210) | 3/154 | 1.6 | 17.1% | coding (1265/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit |
| ? | NZ_CP009273 | = 3015996 | 18 (0.970) | coding (1322/2871 nt) | xdhD | molybdopterin‑dependent oxidoreductase Mo/Fe‑S‑binding subunit | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAG > NZ_CP009273/3015861‑3016021 | atatCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGcc < 2:253818/90‑1 (MQ=255) tGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTg < 2:421489/90‑1 (MQ=255) gCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTgg > 1:20418/1‑90 (MQ=255) ttACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCa > 1:124643/1‑90 (MQ=255) ttACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCa > 2:546288/1‑90 (MQ=255) gTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAAc < 1:539947/90‑1 (MQ=255) tATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACa > 2:314495/1‑90 (MQ=255) aCGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATa > 1:224847/1‑90 (MQ=255) cGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATaa < 2:144115/90‑1 (MQ=255) gCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAg > 2:172986/1‑90 (MQ=255) gCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGGGGGCATGAAACAGCATAAAg > 2:73853/1‑90 (MQ=255) aTCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTc < 1:229151/90‑1 (MQ=255) cGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCAt < 2:219151/90‑1 (MQ=255) cGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCAt < 1:190276/90‑1 (MQ=255) tCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGt < 2:404778/90‑1 (MQ=255) aTCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTaaa > 1:388106/1‑90 (MQ=255) ccACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAactcgctctttaatgacatgaactttatgctgtttcatgcccacgaggcgc > 2:323145‑M1/1‑39 (MQ=255) ccACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAaga > 1:148716/1‑90 (MQ=255) gCCTCCACCCAGGTACCATGGCACTTACGCCGCCAactcgctctttaatgacatgaactttatgctgtttcatgcccacgaggcgcgcga > 2:73723‑M1/1‑35 (MQ=255) gCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACATCATAAAGTTCATGTCATTAAAGAGCGa > 2:152442/1‑90 (MQ=255) ggTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGcggcgg > 2:324385/1‑90 (MQ=255) ccATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTtggcggcgtaagt > 2:20418‑M2/1‑77 (MQ=255) ccATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTtggcggcgtaagt > 1:314495‑M2/1‑77 (MQ=255) ccATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGtttt < 1:546288/90‑1 (MQ=255) aTGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTgg > 1:287205/1‑90 (MQ=255) aCTTACGCCGCCAactcgctctttaatgacatgaactttatgctgtttcatgcccacgaggcgcgcgacctggcggcgtaagtgccatgg > 2:20418‑M1/1‑13 (MQ=255) aCTTACGCCGCCAactcgctctttaatgacatgaactttatgctgtttcatgcccacgaggcgcgcgacctggcggcgtaagtgccatgg > 1:314495‑M1/1‑13 (MQ=255) aCTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCa > 2:301854/1‑90 (MQ=255) cgccgcCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTCGGCGGCGGTTTTGGTTCCAAACAg < 1:99497/90‑1 (MQ=255) | ATATCTGCTTTACTCGTATGGACGGCGATCGTCTGGTTATCCACGCCTCCACCCAGGTACCATGGCACTTACGCCGCCAGGTCGCGCGCCTCGTGGGCATGAAACAGCATAAAGTTCATGTCATTAAAGAGCGAGTTGGCGGCGGTTTTGGTTCCAAACAG > NZ_CP009273/3015861‑3016021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |