| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3454958 = | 44 (1.380) | 3 (0.100) | 3/152 | 2.5 | 7.1% | coding (132/510 nt) | gspH | type II secretion system minor pseudopilin GspH |
| ? | NZ_CP009273 | 3455001 = | 39 (1.350) | coding (175/510 nt) | gspH | type II secretion system minor pseudopilin GspH | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3455051‑3454958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgccACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGCGCTG > NZ_CP009273/3455001‑3455089 GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCTATGGCTAATTCAAGTGCAGCGGTAAACCG > 1:428463/1‑90GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCG > 1:512251/1‑90GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCG > 2:472417/1‑90GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCG > 2:484404/1‑90 CATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCGCGCC > 2:506757/1‑90 TGGATACCGTCAGGGTGTCCACTGCGCGTGGGGCGGGCGGTGGCTAATTCAAGTGCGGCGGTAACCCGCGCCACGCTCAGTGGTCAGCCT < 2:603158/90‑1 TGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCAT < 2:34802/90‑1 CGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGC < 2:719626/90‑1 GCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGC > 1:828522/1‑90 CACGCTCAGTGGTCAGCCTGTTGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGCGCTG < 2:1623/90‑1 CACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGCGCTG < 2:147201/90‑1 CACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGCGCTG < 2:94929/90‑1 GCGCCATGCTGAATCAGAGAAATGGATACCGACAGGCTGACCACTGAGCGTGGCGCGGTCGATGGCTAATTCAAGTGCAGCGGTAAACCGCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/3455051‑3454958‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgcgccACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATGGCGCATTATGGTACCGGGCAAAACACCATCAGCCTGGCGCTG > NZ_CP009273/3455001‑3455089 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |