| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3454958 = | 44 (1.380) | 3 (0.100) | 3/152 | 2.5 | 7.1% | coding (132/510 nt) | gspH | type II secretion system minor pseudopilin GspH |
| ? | NZ_CP009273 | 3455001 = | 39 (1.350) | coding (175/510 nt) | gspH | type II secretion system minor pseudopilin GspH | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGCTGGCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATG > NZ_CP009273/3454869‑3455047 | cagcgccaggctgatggtgttttgcccggtaccataatgcgccatgctgaatcagagaaatggataccgacaggctgaccactgagcgtg < 2:94929‑M1/1‑1 (MQ=255)cagcgccaggctgatggtgttttgcccggtaccataatgcgccatgctgaatcagagaaatggataccgacaggctgaccactgagcgtg < 2:147201‑M1/1‑1 (MQ=255)cagcgccaggctgatggtgttttgcccggtaccataatgcgccatgctgaatcagagaaatggataccaacaggctgaccactgagcgtg < 2:1623‑M1/1‑1 (MQ=255) tgctggAGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAgcgg < 1:126506/90‑1 (MQ=255) tggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGgcgc < 2:90440/90‑1 (MQ=255) tggCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGgcgc < 1:903334/90‑1 (MQ=255) gccaggctgatggtgttttgcccggtaccataatgcgccatgctgaatcagagaaatggataccgacaggctgaccactgagcgtGgcgc > 1:828522‑M1/86‑90 (MQ=255) aCGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATATCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACtt > 1:527442/1‑90 (MQ=255) aaGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt > 1:799794/1‑90 (MQ=255) aaGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt > 1:604409/1‑90 (MQ=255) aaGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt > 2:580246/1‑90 (MQ=255) aaGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt > 1:474153/1‑90 (MQ=255) aaGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt < 2:895329/90‑1 (MQ=255) ggtgCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCAt > 1:715930/1‑90 (MQ=255) ctctTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGAc < 1:352222/90‑1 (MQ=255) gcgccatgctgaatcagagaaatggataccgacaggctgaccactgagcgtGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACcg < 2:719626‑M1/39‑1 (MQ=255) ctTCACATATGGCCGGGAGGATGTCGCCAGCCCTAGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACcg < 2:137407/90‑1 (MQ=255) acaTATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGcc < 1:439002/90‑1 (MQ=255) caTATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCa > 2:512251/1‑90 (MQ=255) atgctgaatcagagaaatggataccgacaggctgaccactgagcgtGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCa < 2:34802‑M1/44‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGc > 1:506505/1‑59 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGc < 2:506505/59‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACg < 1:817909/90‑1 (MQ=255) tatGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACg > 1:329633/1‑90 (MQ=255) ggCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTc > 2:562977/1‑90 (MQ=255) ggCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTc > 2:45693/1‑90 (MQ=255) ccGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAg > 1:147201/1‑90 (MQ=255) gggAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTg > 2:835040/1‑90 (MQ=255) gggAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTg > 1:835585/1‑90 (MQ=255) gggAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTg > 1:894530/1‑90 (MQ=255) gggAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTg > 2:24809/1‑90 (MQ=255) ggaggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt < 1:150844/63‑1 (MQ=255) ggaggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAAtt > 2:150844/1‑63 (MQ=255) ggaggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTgg > 1:562587/1‑90 (MQ=255) ggaggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTgg > 2:557827/1‑90 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTc < 2:850176/90‑1 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTc < 2:716841/90‑1 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTc < 1:61262/90‑1 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTc < 1:72177/90‑1 (MQ=255) aggaTGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTc < 1:772326/90‑1 (MQ=255) tGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGcc > 1:429312/1‑90 (MQ=255) gTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCt < 1:739022/90‑1 (MQ=255) cGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGt < 1:110297/90‑1 (MQ=255) gCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCCCTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTc < 2:36530/90‑1 (MQ=255) gCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTc < 2:799794/90‑1 (MQ=255) gCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTa < 1:618985/90‑1 (MQ=255) aggctgaccactgagcgtGGCGCGGGTTACCGCCGCACTTGAATTAGCCACCGCCCGCCCCACGCGCAGTGGACACCCTGACGGTATCCa < 2:603158‑M1/72‑1 (MQ=255) cgcgcgAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTtct > 1:650022/1‑90 (MQ=255) gcgcgAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTtctc > 1:771135/1‑90 (MQ=255) aaCAGCGGCGCGGTTTCCCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTc < 1:309950/90‑1 (MQ=255) gcggcgCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCa < 1:557827/90‑1 (MQ=255) GGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATg > 2:506757‑M1/1‑90 (MQ=255) | GTGCTGGCGCTGGTCGCTATCACGGCAAGCGTGGTGCTCTTCACATATGGCCGGGAGGATGTCGCCAGCACTCGTGCGCGCGAAACAGCGGCGCGGTTTACCGCTGCACTTGAATTAGCCATCGACCGCGCCACGCTCAGTGGTCAGCCTGTCGGTATCCATTTCTCTGATTCAGCATG > NZ_CP009273/3454869‑3455047 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |