| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4049856 = | 33 (1.040) | 3 (0.110) | 3/148 | 2.4 | 10.0% | intergenic (‑157/+129) | glnL/glnA | nitrogen regulation protein NR(II)/glutamate‑‑ammonia ligase |
| ? | NZ_CP009273 | 4049890 = | 25 (0.890) | intergenic (‑191/+95) | glnL/glnA | nitrogen regulation protein NR(II)/glutamate‑‑ammonia ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCC > NZ_CP009273/4049768‑4049943 | agttgccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTc > 2:825228‑M1/89‑90 (MQ=255)agttgccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTc > 1:443427‑M1/89‑90 (MQ=255)agttgccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTc > 2:107978‑M1/89‑90 (MQ=255) tgccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg > 2:86686‑M1/86‑90 (MQ=255) tgccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCgg < 2:818753‑M1/5‑1 (MQ=255) ccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGcc > 2:272320‑M1/84‑90 (MQ=255) ccgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGcc < 1:570635‑M1/7‑1 (MQ=255) cgtggaaacttttcgcctgtctctggcaggcctgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttaTCCGGCCt > 1:442953‑M1/83‑90 (MQ=255) gaATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc > 1:190941/1‑90 (MQ=255) gaATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAc > 1:725864/1‑90 (MQ=255) aaTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAcc < 1:619829/90‑1 (MQ=255) aaTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAcc < 1:632858/90‑1 (MQ=255) aaTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTAcc < 1:884489/90‑1 (MQ=255) aTTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACca > 1:448502/1‑90 (MQ=255) ttGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACcac > 1:156734/1‑90 (MQ=255) ggAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatcat > 2:322660/1‑90 (MQ=255) ggAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatcat > 1:193556/1‑90 (MQ=255) ggAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCAcatcat > 2:682915/1‑90 (MQ=255) gaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCCCGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAc < 2:100707/90‑1 (MQ=255) gaAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCAc < 1:907706/90‑1 (MQ=255) cATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGcc > 1:550133/1‑90 (MQ=255) cctgggatcggtggcaagcacatcacgccggaaacgacgccaatgcgacttaTCCGGCCTACCCCATCATCACCGTGTAGGCCGGATAAg < 2:800917‑M1/38‑1 (MQ=255) gggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGcc < 1:614147/55‑1 (MQ=255) gggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGcc > 2:614147/1‑55 (MQ=255) gggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGc > 2:210771/1‑90 (MQ=255) ggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCa > 1:725168/1‑90 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt > 2:577271/1‑90 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt > 1:199364/1‑90 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg > 2:15132/1‑90 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg > 2:483848/1‑90 (MQ=255) cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCAt > 1:613692/1‑90 (MQ=255) gACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc > 2:401309/1‑90 (MQ=255) ttCACGTTGGAGAGCGACTCACCTGCTCCGGACTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa > 1:529377/1‑90 (MQ=255) ccggatgcgacgcaaatgcgtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGAA‑AAGACGCATTTGCGTCGCATCCGGCGTGAtg < 2:515184‑M1/65‑1 (MQ=255) tGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt > 2:229202/1‑90 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCCCCGTGTAGGCCGGTTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc < 2:624434/90‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc < 1:53076/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 1:577271/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 2:455156/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 2:128859/90‑1 (MQ=255) gtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa < 2:906187‑M1/84‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa < 2:199364/90‑1 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGcc < 2:516623/90‑1 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGCCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGcc < 1:854064/90‑1 (MQ=255) | GCATCAGAGAATTGACGGAGAAAAAAGCCCATGCAGAGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCC > NZ_CP009273/4049768‑4049943 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |