| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4049856 = | 33 (1.040) | 3 (0.110) | 3/148 | 2.4 | 10.0% | intergenic (‑157/+129) | glnL/glnA | nitrogen regulation protein NR(II)/glutamate‑‑ammonia ligase |
| ? | NZ_CP009273 | 4049890 = | 25 (0.890) | intergenic (‑191/+95) | glnL/glnA | nitrogen regulation protein NR(II)/glutamate‑‑ammonia ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACT > NZ_CP009273/4049804‑4049977 | cctgggatcggtggcaagcacatcacgccggaaacgacgccaatgcgacttaTCCGGCCTACCCCATCATCACCGTGTAGGCCGGATAAg < 2:800917‑M1/38‑1 (MQ=255) tgggatcggtggcaagcacatcacgccggatgcgacgcaaatgcgtcttatccggcctacacggtgatgatgtggtaggccggaTAAGAc < 2:906187‑M2/6‑1 (MQ=255) gggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGc > 2:210771/1‑90 (MQ=255) ggCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCa > 1:725168/1‑90 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt > 1:199364/1‑90 (MQ=255) gCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCAt > 2:577271/1‑90 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg > 2:483848/1‑90 (MQ=255) tAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCg > 2:15132/1‑90 (MQ=255) cTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCAt > 1:613692/1‑90 (MQ=255) gACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATcc > 2:401309/1‑90 (MQ=255) catcacgccggatgcgacgcaaatgcgtcttttcggcctacacggtgatgatgtggtaggccggaTAAGACGCATTTGCGTCGCATCCgg < 2:515184‑M2/25‑1 (MQ=255) ttCACGTTGGAGAGCGACTCACCTGCTCCGGACTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGa > 1:529377/1‑90 (MQ=255) ccggatgcgacgcaaatgcgtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGAA‑AAGACGCATTTGCGTCGCATCCGGCGTGAtg < 2:515184‑M1/65‑1 (MQ=255) tGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCtt > 2:229202/1‑90 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCCCCGTGTAGGCCGGTTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc < 2:624434/90‑1 (MQ=255) gCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc < 1:53076/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 2:128859/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 1:577271/90‑1 (MQ=255) cGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCg < 2:455156/90‑1 (MQ=255) gtcttaTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa < 2:906187‑M1/84‑1 (MQ=255) aCCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCa < 2:199364/90‑1 (MQ=255) cttatccggcctacacggtgatgatggggtaggccggaTAAGTCGCATTGGCGTCGTTTCCGGCGTGATGTGCTTGCCACCGATCCCAgg < 2:800917‑M2/52‑1 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGcc < 2:516623/90‑1 (MQ=255) gCTCCGGCCTACCACATCATCACCGTGTAGCCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGcc < 1:854064/90‑1 (MQ=255) GGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa < 1:151166‑M1/90‑1 (MQ=255) GGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa < 2:792945‑M1/90‑1 (MQ=255) GGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa < 2:655484‑M1/90‑1 (MQ=255) GGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa < 1:282661‑M1/90‑1 (MQ=255) GGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCa < 1:846130‑M1/90‑1 (MQ=255) ACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGAc < 2:354779‑M1/90‑1 (MQ=255) ACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGAc < 1:912893‑M1/90‑1 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc > 2:701489/1‑61 (MQ=255) atcaCCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCAcc < 1:701489/61‑1 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTc > 2:570635/1‑90 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTc > 1:362169/1‑90 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTc > 1:251704/1‑90 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTc > 1:836275/1‑90 (MQ=255) gtgtAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTc > 2:894271/1‑90 (MQ=255) aggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACg > 1:442953‑M2/9‑90 (MQ=255) ggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACgg > 2:272320‑M2/8‑90 (MQ=255) ggccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACgg < 1:570635‑M2/83‑1 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCa < 2:818753‑M2/85‑1 (MQ=255) ccggaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCa > 2:86686‑M2/6‑90 (MQ=255) gaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 2:107978‑M2/3‑90 (MQ=255) gaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 1:443427‑M2/3‑90 (MQ=255) gaTAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACt > 2:825228‑M2/3‑90 (MQ=255) | AGATGGGCTACAGATAGCTGACAAACTTCACGTTGGAGAGCGACTCACCTGCTCCGGCCTACCACATCATCACCGTGTAGGCCGGATAAGACGCATTTGCGTCGCATCCGGCGTGATGTGCTTGCCACCGATCCCAGGCCTGCCAGAGACAGGCGAAAAGTTTCCACGGCAACT > NZ_CP009273/4049804‑4049977 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |