| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4437215 | 32 (1.180) | 3 (0.130) | 3/150 | 2.1 | 9.1% | coding (3287/3780 nt) | tamB | autotransporter assembly complex protein TamB |
| ? | NZ_CP009273 | = 4437296 | 32 (1.330) | coding (3368/3780 nt) | tamB | autotransporter assembly complex protein TamB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4437123‑4437215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgccagaCCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGC < NZ_CP009273/4437296‑4437210 CGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC < 2:719827/90‑1 GGGCAGATCAACATCCCTGAAGGGCGCTTCCTTGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCA > 1:226852/1‑90 GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA < 1:540186/90‑1 GGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC < 1:156721/45‑1 GGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC > 2:156721/1‑45 GATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC < 1:125370/39‑1 GATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCC > 2:125370/1‑39 GTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCC < 1:287223/55‑1 GTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGACCAGTGACGCGAACTCC > 2:287223/1‑55 CTGGTCCGCCAGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGG > 2:483917/1‑90 AGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGC < 2:198504/90‑1 AGACCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGC < 2:340397/90‑1 CGGGCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/4437123‑4437215‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtccgccagaCCAGTGACGCGAACTCCGGCGATTACGTCGTCTTCTGTAGCATCCGGGTTACGAATAGCTTCAATATTAAGATACGGTTGATCTGGC < NZ_CP009273/4437296‑4437210 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |