| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4437215 | 32 (1.180) | 3 (0.130) | 3/150 | 2.1 | 9.1% | coding (3287/3780 nt) | tamB | autotransporter assembly complex protein TamB |
| ? | NZ_CP009273 | = 4437296 | 32 (1.330) | coding (3368/3780 nt) | tamB | autotransporter assembly complex protein TamB | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACTGGTCTGGC > NZ_CP009273/4437126‑4437302 | gCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGA < 1:540186‑M1/90‑1 (MQ=255) cAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAAcc < 2:33756/90‑1 (MQ=255) aCATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGt < 1:288533/90‑1 (MQ=255) aTCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTAt < 1:211476/90‑1 (MQ=255) ccTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATc > 1:283153/1‑79 (MQ=255) ccTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATc < 2:283153/79‑1 (MQ=255) ccTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCtt < 1:191211/90‑1 (MQ=255) ccTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCtt > 2:693524/1‑90 (MQ=255) ccTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCtt > 2:615359/1‑90 (MQ=255) cTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTa > 2:554356/1‑90 (MQ=255) gcgcTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGa > 2:774633/1‑90 (MQ=255) gcgcTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGa > 1:513475/1‑90 (MQ=255) cgcTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGaa > 1:100575/1‑90 (MQ=255) aTGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTc > 1:735431/1‑90 (MQ=255) aTGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAAcc < 2:510169/90‑1 (MQ=255) aTGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAAcc > 2:201328/1‑90 (MQ=255) aTGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAAcc < 2:29067/90‑1 (MQ=255) ggTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCg < 2:687171/90‑1 (MQ=255) aGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATg > 2:240626/1‑90 (MQ=255) ggATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGc < 2:662184/90‑1 (MQ=255) ggATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGc > 2:324227/1‑90 (MQ=255) ggATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGc < 1:201328/90‑1 (MQ=255) tGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACag > 1:757643/1‑90 (MQ=255) tGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCAGATGCTACag > 2:491286/1‑90 (MQ=255) gtgCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGAccagtgacgcgaactcc < 1:287223‑M1/55‑18 (MQ=255) gtgCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGAccagtgacgcgaactcc > 2:287223‑M1/1‑38 (MQ=255) tgCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCGACCGTATCTTAATATTGAAGCTGTTCGTAACCCGGATGCTACAGAAgacg > 2:586429/1‑90 (MQ=255) gCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTaa > 2:346778/1‑69 (MQ=255) gCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTaa < 1:346778/69‑1 (MQ=255) gCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAgacga > 1:112172/1‑90 (MQ=255) gCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAgacga > 2:581066/1‑90 (MQ=255) gAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGcc > 2:668259/1‑90 (MQ=255) ctGGTCCGCCAGAccagtgacgcgaactccggcgattacgtcgtcttctgtagcatccgggttacgaatagcttcaatattaagatacgg > 2:483917‑M1/1‑13 (MQ=255) ggTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACt > 2:494670/1‑90 (MQ=255) ggTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACt < 2:730289/90‑1 (MQ=255) gTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACTg > 2:492528/1‑90 (MQ=255) gCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACTGGtct < 2:198504‑M2/90‑4 (MQ=255) gCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACTGGtct < 2:340397‑M2/90‑4 (MQ=255) aGAccagtgacgcgaactccggcgattacgtcgtcttctgtagcatccgggttacgaatagcttcaatattaagatacggttgatctggc < 2:198504‑M1/90‑88 (MQ=255) aGAccagtgacgcgaactccggcgattacgtcgtcttctgtagcatccgggttacgaatagcttcaatattaagatacggttgatctggc < 2:340397‑M1/90‑88 (MQ=255) | GCAGATCAACATCCCTGAAGGGCGCTTCCATGCCTATGGTCAGGATCTGATTGTGCGTAAAGGTGAGTTACTGTTCTCTGGTCCGCCAGATCAACCGTATCTTAATATTGAAGCTATTCGTAACCCGGATGCTACAGAAGACGACGTAATCGCCGGAGTTCGCGTCACTGGTCTGGC > NZ_CP009273/4437126‑4437302 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |