| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 192125 | 22 (0.810) | 4 (0.160) | 4/154 | 1.8 | 16.4% | coding (733/759 nt) | ispU | (2E,6E)‑farnesyl‑diphosphate‑specific ditrans,polycis‑undecaprenyl‑diphosphate synthase |
| ? | NZ_CP009273 | = 192230 | 21 (0.850) | coding (67/858 nt) | cdsA | phosphatidate cytidylyltransferase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAGATGTTCTCTGGCCCGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTC > NZ_CP009273/192039‑192211 | cAGATGTTCTCTGGCCCGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCg > 1:686474/1‑90 (MQ=255)cAGATGTTCTCTGGCCCGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCg > 1:133263/1‑90 (MQ=255) ttCTCTGGCCCGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCg < 1:391635/90‑1 (MQ=255) cGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAAc < 2:764261/90‑1 (MQ=255) cGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAAc < 2:121263/90‑1 (MQ=255) gATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCAacagaaacaacgccgcgatg > 1:406161‑M1/1‑70 (MQ=255) gATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACa < 2:714512/90‑1 (MQ=255) aGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTc > 2:169399/1‑90 (MQ=255) tttGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCtt < 2:221500/90‑1 (MQ=255) ttGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCttt > 1:325944/1‑90 (MQ=255) ggggCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTg < 2:29084/90‑1 (MQ=255) ggggCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTg < 1:392518/90‑1 (MQ=255) ggggCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTg < 2:133263/90‑1 (MQ=255) gCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAg > 2:13840/1‑90 (MQ=255) tAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATc < 2:22064/90‑1 (MQ=255) tAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATc < 2:24355/90‑1 (MQ=255) aTGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGcc < 2:612478/90‑1 (MQ=255) ttGCTAATCGAGAGCGTCGTTTCGGCGGCAacagaaacaacgccgcgatgacgacgggtatttacacaaaagcagatatcaggcgatact > 1:298293‑M1/1‑30 (MQ=255) tGCTAATCGAGAGCGTCGTTTCGGCGGCAacagaaacaacgccgcgatgacgacgggtattaacacaaaagcagatatcaggcgatactt > 2:214240‑M1/1‑29 (MQ=255) tGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATc < 1:570385/90‑1 (MQ=255) tGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATc < 1:243678/90‑1 (MQ=255) gCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCt < 2:686474/90‑1 (MQ=255) cGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCtttt < 1:380643/90‑1 (MQ=255) agagCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTtgt < 2:423576/90‑1 (MQ=255) agagCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTtgt < 2:505281/90‑1 (MQ=255) ttCGGCGGCAacagaaacaacgccgcgatgacgacgggtattaacacaaaagcagatatcaggcgatacttcagcaaaagcgacccccat > 1:545130‑M1/1‑10 (MQ=255) gcggcAacagaaacaacgccgcgatgacgacgggtattaacacaaaagcagatatcaggcgatacttcagcaaaagcgacccccatcagg < 2:13359‑M1/90‑85 (MQ=255) ggcAacagaaacaacgccgcgatgacgacgggtattaacacaaaagcagatatcaggcgatacttcagcaaaagcgacccccatcaggct < 2:315592‑M1/90‑87 (MQ=255) | CAGATGTTCTCTGGCCCGATTTCGATGAACAAGACTTTGAAGGGGCGTTAAATGCCTTTGCTAATCGAGAGCGTCGTTTCGGCGGCACCGAGCCCGGTGATGAAACAGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTC > NZ_CP009273/192039‑192211 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |