New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 192125	22 (0.810)	4 (0.160)	4/154	1.8	16.4%	coding (733/759 nt)	ispU	(2E,6E)‑farnesyl‑diphosphate‑specific ditrans,polycis‑undecaprenyl‑diphosphate synthase
	?	NZ_CP009273	= 192230	21 (0.850)					coding (67/858 nt)	cdsA	phosphatidate cytidylyltransferase
Rejected: Frequency below/above cutoff threshold.

AGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCTTAGCGGTTTTACCAC  >  NZ_CP009273/192145‑192315                                                                                      |                                                                                      aGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTtgcc                                                                                   <  2:315592‑M2/90‑5 (MQ=255)   ccTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTtgccgc                                                                                 <  2:13359‑M2/90‑7 (MQ=255)       aTGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTtgccgccgaa                                                                             >  1:545130‑M2/1‑80 (MQ=255)              tCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTc                                                                      <  2:131753/90‑1 (MQ=255)                 cTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGcc                                                                   <  1:291640/90‑1 (MQ=255)                          aaGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTtgccgccgaaacgacgctctcgattagca                                                          >  2:214240‑M2/1‑61 (MQ=255)                           aGTATCGCCTGATATCTGCTTTTGTGTAAATACCCGTCGTCATCGCGGCGTTGTTTCTGTtgccgccgaaacgacgctctcgattagcaa                                                         >  1:298293‑M2/1‑60 (MQ=255)                                 gCCTGATATCTGCTTTTGTGTTAAAACCCGTCGTCATCGCGGCGTGGTTTCTGTTACCGCCGGGGGGTTTCGCTCTCGGAACGCtggtgg                                                   <  1:526822/90‑1 (MQ=255)                                      atatCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGc                                              >  1:32809/1‑90 (MQ=255)                                          cTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGc                                          >  2:369708/1‑90 (MQ=255)                                            gCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTg                                        >  1:618646/1‑90 (MQ=255)                                            gCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTg                                        >  2:743970/1‑90 (MQ=255)                                               tttGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCa                                     >  1:484921/1‑90 (MQ=255)                                                ttGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAg                                    >  2:60210/1‑90 (MQ=255)                                                     ttAATCCCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTgg                               <  1:439287/90‑1 (MQ=255)                                                     ttAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTgg                               <  1:743970/90‑1 (MQ=255)                                                       aaTACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGcc                                                                   >  1:689605/1‑52 (MQ=255)                                                       aaTACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGcc                                                                   <  2:689605/52‑1 (MQ=255)                                                            ccGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATggg                        >  1:186075/1‑90 (MQ=255)                                                               tcgtcATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGAc                     >  1:504031/1‑90 (MQ=255)                                                                   cATCGCGGCGTTGTTTCTGTtgccgccgaaacgacgctctcgattagcaaaggcatttaacgccccttcaaagtcttgttcatcgaaatc                 >  1:406161‑M2/1‑20 (MQ=255)                                                                   cATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCt                 >  2:628822/1‑90 (MQ=255)                                                                        cggcgTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCTTAGCg            >  2:621919/1‑90 (MQ=255)                                                                              tgttTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCAt                                            >  2:83591/1‑52 (MQ=255)                                                                              tgttTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCAt                                            <  1:83591/52‑1 (MQ=255)                                                                                  tCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCTTAGCGGTTTTACCAc  >  2:629488/1‑90 (MQ=255)                                                                                  tCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCTTAGCGGTTTTACCAc  <  2:325944/90‑1 (MQ=255)                                                                                      |                                                                                      AGCCTGATGGGGGTCGCTTTTGCTGAAGTATCGCCTGATATCTGCTTTTGTGTTAATACCCGTCGTCATCGCGGCGTTGTTTCTGTTGCCGCCGGTGGGGTTCGCCATTGTAACGCTGGTGGTCTGCATGCTGGCAGCGTGGGAATGGGGACAGCTTAGCGGTTTTACCAC  >  NZ_CP009273/192145‑192315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.