| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3122373 = | 38 (1.400) | 4 (0.170) | 3/148 | 2.1 | 10.9% | coding (743/765 nt) | glcC | transcriptional regulator GlcC |
| ? | NZ_CP009273 | 3122512 = | 32 (1.350) | coding (1027/1137 nt) | yghO | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGCAGCACGCGATCATGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAG > NZ_CP009273/3122287‑3122461 | gtatcagttcagccgcatcggcccggtgattgcgctgttattgattgaagccttacgcgatccgtttgcccgccggaagatcgatgCGCt > 2:306862‑M1/87‑90 (MQ=255)gtatcagttcagccgcatcggcccggtgattgcgctgttattgattgaagccttacgcgatccatttgcccgccggaagatcgatgCGCt < 2:22176‑M1/4‑1 (MQ=255) gcagcaCGCGATCATGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTg < 2:526256/90‑1 (MQ=255) atcagttcagccgcatcggcccggtgattgcgctgttattgattgaagccttacgcgatccgtttgcccgccggaagatcgatgCGCTgg > 2:152894‑M1/85‑90 (MQ=255) cagttcagccgcatcggcccggtgattgcgctgttattgattgaagccttacgcgatccgtttgcccgccggaagatcgatgCGCTGgag > 2:496137‑M1/83‑90 (MQ=255) agttcagccgcatcggcccggtgattgcgctgttattgattgaagccttacgcgatccgtttgcccgccggaagatcgatgCGCTGgaga > 2:762247‑M1/82‑90 (MQ=255) cgcgATCATGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATg > 1:215677/1‑90 (MQ=255) aTCATGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAAcc < 1:494326/90‑1 (MQ=255) aTGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGa > 2:276552/1‑90 (MQ=255) gtgCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGt > 2:634996/1‑90 (MQ=255) ggACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGc < 1:465948/90‑1 (MQ=255) gACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAAcc < 1:39889/80‑1 (MQ=255) gACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAAcc > 2:39889/1‑80 (MQ=255) gACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCt > 2:572428/1‑90 (MQ=255) aCCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCGACCATTTGATTCGCTCGGCGGTGCCGATGGAGATGAACCTGAGTTAGCTg < 1:195851/90‑1 (MQ=255) cGTGAAAAAGAATCTCCACGTTATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGt > 2:231210/1‑90 (MQ=255) gTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTa > 2:692634/1‑90 (MQ=255) aaaGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTaaa < 2:244314/90‑1 (MQ=255) aGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATc < 1:258192/90‑1 (MQ=255) ttgaagccttacgcgatccgtttgcccgccggaagatcgatgCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATAc < 2:636043‑M1/48‑1 (MQ=255) gaagccttacgcgatccgtttgcccgccggaagatcgatgCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACaa < 2:245990‑M1/50‑1 (MQ=255) atCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACaa < 1:729379/90‑1 (MQ=255) tCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAAt < 2:101732/90‑1 (MQ=255) cTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTa < 2:562868/90‑1 (MQ=255) cTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTa < 1:686754/90‑1 (MQ=255) ggAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAAc > 1:128980/1‑90 (MQ=255) ggAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAAc > 1:466143/1‑90 (MQ=255) ggAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAAc > 1:523657/1‑90 (MQ=255) ggAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAAc > 1:626765/1‑90 (MQ=255) ggAAGGCCACCATTTGATTCGCTCGGCGGCGCCGCTGGAGATGAACCTGCGGTAGCTGGGATTAAATCTGCTTTTCATACAATCGGTaaa > 1:32568/1‑89 (MQ=255) accaTTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTAc > 2:162875/1‑90 (MQ=255) accaTTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTAc > 2:180267/1‑90 (MQ=255) ttGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTc < 1:116501/90‑1 (MQ=255) tGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTcc < 2:39217/90‑1 (MQ=255) tGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTcc < 2:39216/90‑1 (MQ=255) ccgccggaagatcgatgCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCg < 1:558134‑M1/73‑1 (MQ=255) aTTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGc > 1:696380/1‑90 (MQ=255) cGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGcccc > 2:57487/1‑90 (MQ=255) gCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCt < 1:709327/37‑1 (MQ=255) gCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCt > 2:709327/1‑37 (MQ=255) gCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTcc > 2:308747/1‑84 (MQ=255) gCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTcc < 1:308747/84‑1 (MQ=255) gCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCa > 2:412481/1‑90 (MQ=255) cggTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCAATGCGt < 2:619075/90‑1 (MQ=255) ggCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGGAACGCTTGTACGGCTCCGCCCCAATGCGTTCCa < 1:22176‑M1/88‑1 (MQ=255) ccGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAg < 1:276552/90‑1 (MQ=255) ccGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAg < 2:109786/90‑1 (MQ=255) | CGCAGCACGCGATCATGTGCGGACCGTGAAAAAGAATCTCCACGATATCGAGCTGGAAGGCCACCATTTGATTCGCTCGGCGGTGCCGCTGGAGATGAACCTGAGTTAGCTGGTATTAAATCTGCTTTTCATACAATCGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAG > NZ_CP009273/3122287‑3122461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |