| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3122373 = | 38 (1.400) | 4 (0.170) | 3/148 | 2.1 | 10.9% | coding (743/765 nt) | glcC | transcriptional regulator GlcC |
| ? | NZ_CP009273 | 3122512 = | 32 (1.350) | coding (1027/1137 nt) | yghO | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTGATAC > NZ_CP009273/3122424‑3122597 | tggaacgcattggggcggagccgtacaagcgttcccgattgtatgaaaagcagatttaataccagctaactcaggttcatctccagcgcc < 1:22176‑M2/2‑2 (MQ=255) gTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATc < 2:241802/90‑1 (MQ=255) gTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATc < 2:443163/90‑1 (MQ=255) ggCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCcggcgg < 1:253812/90‑1 (MQ=255) cggagccgtacaagcgttaccgattgtatgaaaagcagatttaataccagctaactcaggttcatctccagcgCATCGATCTTCcggcgg < 1:558134‑M2/17‑1 (MQ=255) gCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCggg > 2:299484/1‑90 (MQ=255) gCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCggg > 1:278709/1‑90 (MQ=255) cTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGc > 1:600051/1‑90 (MQ=255) gCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAAc > 1:22303/1‑90 (MQ=255) cAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGAt < 2:22303/90‑1 (MQ=255) cAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGAt < 1:412481/90‑1 (MQ=255) gCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCcggc > 1:393736/1‑74 (MQ=255) gCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCcggc < 2:393736/74‑1 (MQ=255) gCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCtt > 1:94091/1‑90 (MQ=255) ttgtatgaaaagcagatttaataccagctaactcaggttcatctccagcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtc < 2:245990‑M2/40‑1 (MQ=255) cATGTTATTCCTGCCTGTATTGGTTTCGAGGATCCATGCCATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtc < 2:523657/90‑1 (MQ=255) cATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtc < 1:478596/90‑1 (MQ=255) cATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtc < 2:278709/90‑1 (MQ=255) cATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtc < 2:94091/90‑1 (MQ=255) aTGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtca > 2:382484/1‑90 (MQ=255) aTGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtca > 1:211280/1‑90 (MQ=255) tGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtcaa < 2:669701/90‑1 (MQ=255) tGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtcaa < 2:215677/90‑1 (MQ=255) gtatgaaaagcagatttaataccagctaactcaggttcatctccagcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTtcaa < 2:636043‑M2/42‑1 (MQ=255) tGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACa < 2:266428/90‑1 (MQ=255) ccTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAgc < 2:293854/90‑1 (MQ=255) gTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCa > 1:116572/1‑90 (MQ=255) gTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCa > 2:734355/1‑90 (MQ=255) gTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCa > 1:390943/1‑90 (MQ=255) tATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTCCAATCAATAACAGCGCaa < 1:624658/90‑1 (MQ=255) ggTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCAc > 1:468349/1‑90 (MQ=255) tttCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCg > 1:17959/1‑90 (MQ=255) tttCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCg > 1:425620/1‑90 (MQ=255) aTGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGc < 1:382484/90‑1 (MQ=255) aCATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGa < 2:425620/90‑1 (MQ=255) aCATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGa < 2:17959/90‑1 (MQ=255) tctccagcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACt > 2:762247‑M2/10‑90 (MQ=255) ctccagcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTg > 2:496137‑M2/9‑90 (MQ=255) ccagcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTGAt > 2:152894‑M2/7‑90 (MQ=255) agcgCATCGATCTTCCGGCGGGCAAATGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTGATAc < 2:22176‑M2/86‑1 (MQ=255) agcgCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTGATAc > 2:306862‑M2/5‑90 (MQ=255) | CGGTAACGCTTGTACGGCTCCGCCCCAATGCGTTCCAGCATGTTATTCATGCCTGTATTGGTTTCGAGGATCCATGACATCTCCAGCGCATCGATCTTCCGGCGGGCAAACGGATCGCGTAAGGCTTCAATCAATAACAGCGCAATCACCGGGCCGATGCGGCTGAACTGATAC > NZ_CP009273/3122424‑3122597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |