| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3614374 = | 10 (0.370) | 5 (0.200) | 5/154 | 1.6 | 23.2% | coding (1823/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP009273 | 3614426 = | 24 (0.970) | coding (1875/4236 nt) | rhsB | rhs element protein RhsB | |||||
CAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTAT > NZ_CP009273/3614289‑3614455 | gtggctgccgttttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgtcagcccgccctgcgtggtacggcc > 1:655971‑M1/86‑88 (MQ=255) ttcactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgtcagcccgccctgcgtggtaCGGACGGCAGCAGAAAc > 1:338010‑M1/74‑90 (MQ=255) cactggtcaggcggatgacccgtccggcagcatcgtattccatactgcgcgtcagcccgccctgcgtggtaCGGACGGCAGCAGAAACgg > 1:119370‑M1/72‑90 (MQ=255) ctgcgcgtcagcccgccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAgg < 2:76866‑M1/63‑1 (MQ=255) gcccgccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGGGGGGAAAGGCCGTCCGTGCCACGCAGGGCGGGCTGAc < 1:212804‑M1/73‑1 (MQ=255) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:122101/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:350677/90‑1 (MQ=33) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:439275/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 2:579868/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 2:586358/90‑1 (MQ=35) ccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGGCCGGACCACGCAGGGCGGGCTGACGCGCa < 1:384583‑M1/78‑1 (MQ=255) cgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg < 1:728884/90‑1 (MQ=35) cgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg < 2:152260/90‑1 (MQ=35) cATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTAt < 1:215885/90‑1 (MQ=35) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCa > 1:527003/1‑81 (MQ=33) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCa < 2:527003/81‑1 (MQ=35) | CAGTTAATTGCCGTGAAAGACACGCAGGGCCATGAAACGCGGTATGAATACAACATCGCCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTAT > NZ_CP009273/3614289‑3614455 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |