| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3614374 = | 10 (0.370) | 5 (0.200) | 5/154 | 1.6 | 23.2% | coding (1823/4236 nt) | rhsB | rhs element protein RhsB |
| ? | NZ_CP009273 | 3614426 = | 24 (0.970) | coding (1875/4236 nt) | rhsB | rhs element protein RhsB | |||||
CCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCAC > NZ_CP009273/3614347‑3614510 | ctgcgcgtcagcccgccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAgg < 2:76866‑M1/63‑1 (MQ=255) tgcgcgtcagcccgccctgcgtggtccggccggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtccgTACCACGCAggg < 1:384583‑M2/12‑1 (MQ=255) gtcagcccgccctgcgtggcacggacggcctttccccccgcatcgtactgtgtcccgtttctgctgccgtccgTACCACGCAgggcgggc < 1:212804‑M2/17‑1 (MQ=255) gcccgccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGGGGGGAAAGGCCGTCCGTGCCACGCAGGGCGGGCTGAc < 1:212804‑M1/73‑1 (MQ=255) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:122101/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:439275/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 2:586358/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 2:579868/90‑1 (MQ=35) gccgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:350677/90‑1 (MQ=33) ccctgcgtggtaCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGGCCGGACCACGCAGGGCGGGCTGACGCGCa < 1:384583‑M1/78‑1 (MQ=255) cgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg < 1:728884/90‑1 (MQ=35) cgTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAg < 2:152260/90‑1 (MQ=35) cctgcgtggtacggacggcctttccccacgcatcgtactgtgtcccgtttctgctgccgtccgTACCACGCAGGGCGGGCTGACGCGCAg < 2:76866‑M2/27‑1 (MQ=255) cATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTAt < 1:215885/90‑1 (MQ=35) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCa < 2:527003/81‑1 (MQ=35) ccccGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCa > 1:527003/1‑81 (MQ=33) GACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAAGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGAt > 2:648957‑M1/1‑90 (MQ=255) GCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGAtgctg < 2:322445‑M1/90‑1 (MQ=255) GCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGAtgctg < 2:710124‑M1/90‑1 (MQ=255) CAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGAtgctgc < 1:292798‑M1/90‑1 (MQ=255) cagAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCgg > 2:101829/1‑90 (MQ=33) tACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTg > 1:646058/1‑90 (MQ=33) aTGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCa > 1:122537/1‑90 (MQ=33) aTGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCa > 2:764936/1‑90 (MQ=33) ccgtttctgctgccgtccgTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg > 1:119370‑M2/20‑90 (MQ=255) cGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTg > 1:504281/1‑90 (MQ=33) tGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 2:114142/42‑1 (MQ=40) tGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc > 1:114142/1‑42 (MQ=38) tGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaa > 2:100931/1‑90 (MQ=33) tGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaa > 2:145666/1‑90 (MQ=33) tGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaa > 1:113401/1‑90 (MQ=33) tGGGGAAAGGCCGTCCGGACCACGCAGGGCGGGCTGACGCGCAGTGTGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaa > 1:162487/1‑90 (MQ=255) gtttctgctgccgtccgTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGaa > 1:338010‑M2/18‑90 (MQ=255) aaGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCAGCCGCCTGACCAGTGAAAACGGc > 2:660656/1‑90 (MQ=18) aGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc > 2:145265/1‑35 (MQ=40) aGGCCGTCCGTACCACGCAGGGCGGGCTGACgcgc < 1:145265/35‑1 (MQ=255) ggccgTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCcac > 1:655971‑M2/6‑90 (MQ=255) | CCGGTGACCTGACCGCCGTCATTGCCCCGGACGGCAGCAGAAACGGGACACAGTACGATGCGTGGGGAAAGGCCGTCCGTACCACGCAGGGCGGGCTGACGCGCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCAC > NZ_CP009273/3614347‑3614510 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |