| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19796 = | NA (NA) | 25 (0.730) | 17/170 | 0.5 | 83.3% | intergenic (‑1/+15) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 2248844 | 5 (0.150) | coding (50/699 nt) | yeiL | transcriptional regulator YeiL | |||||
TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTATGAGATTTCTCATATTTA < NZ_CP009273/2248844‑2248762 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:895592/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 1:507138/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:101451/90‑1TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCG < 2:169704/90‑1 GTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTC < 1:586832/90‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCAC < 2:806257/90‑1 TCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCAC > 2:218405/1‑90 AATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCA < 2:717383/90‑1 GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTG > 1:734091/1‑90 GTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGC < 1:328603/90‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCCCTCATCAATTGCTGCTTAAG < 1:676144/90‑1 GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAG < 1:308875/90‑1 TCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCAC < 2:240743/90‑1 CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACG < 1:792494/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGAT < 2:901563/90‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGAT > 2:364609/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGAT > 2:17603/1‑90 ATAAAACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTT > 2:854610/1‑90 AACACTATCAATAAGTTGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCC < 1:224316/90‑1 TGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTATGAGATTTCTCA > 2:566563/1‑90 TGGAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTATGAGATTTCTCA > 1:670903/1‑90 GAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTAGGAGATTTCTCATA > 1:846055/1‑90 GAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGA > 1:887882/1‑63 GAGTCATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGA < 2:887882/63‑1 CATTACCGATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTATGAGATTTCTCATATTTA > 1:166537/1‑90 TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/19884‑19796‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GATTCACTCATCAATTGCTGCTTAAGATCATTATTGTGGATTTCTTTCACGATGTTTATCCGCTATGAGATTTCTCATATTTA < NZ_CP009273/2248844‑2248762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |