New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	4059163 =	79 (1.690)	3 (0.070)	3/152	3.4	4.2%	intergenic (‑37/+6)	yihO/yihP	MFS transporter/MFS transporter
	?	NZ_CP009273	= 4059159	66 (1.580)					intergenic (‑33/+10)	yihO/yihP	MFS transporter/MFS transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATC  >  NZ_CP009273/4059075‑4059250                                                                                         |                                                                                        cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  2:1022081/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        >  1:1137866/1‑90 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  1:935196/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  2:509365/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  1:127560/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  2:1265914/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  2:522712/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  1:815838/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt                                                                                        <  2:863739/90‑1 (MQ=255)        ttCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttattattatta                                                                                 >  2:41378/1‑90 (MQ=255)         tCCCGCAGATTCAGTTTTAATGTCAGTGGATGATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTAc                                                                                >  1:998406/1‑90 (MQ=255)               aGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTg                                                                          <  2:481130/90‑1 (MQ=255)                      gTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTAc                                                                   <  2:27879/90‑1 (MQ=255)                       ttttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACg                                                                  <  1:876958/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  2:35200/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  1:814337/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  2:1070270/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  1:536354/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  2:958205/90‑1 (MQ=255)                        tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg                                                                 <  2:882097/90‑1 (MQ=255)                          tAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGc                                                               >  2:1315979/1‑90 (MQ=255)                               tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          <  1:1099641/90‑1 (MQ=255)                               tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          <  2:40331/90‑1 (MQ=255)                               tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          <  2:354741/90‑1 (MQ=255)                               gcAGTGGATTATGGTCAGACATAATCGCTCCTTATAACGCCCCGCAGGGCGTCCTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          <  2:963823/89‑1 (MQ=255)                                cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt                                                         >  2:516990/1‑90 (MQ=255)                                cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt                                                         >  2:950315/1‑90 (MQ=255)                                cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt                                                         >  1:174762/1‑90 (MQ=255)                                cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt                                                         >  1:205878/1‑90 (MQ=255)                                 aGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTGCGGGCTTCTAtc                                                        <  1:749873/90‑1 (MQ=255)                                 aGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAtc                                                        <  1:110833/90‑1 (MQ=255)                                       ttATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTcc                                                  <  1:1315979/90‑1 (MQ=255)                                              cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc                                           >  2:939335/1‑90 (MQ=255)                                              cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc                                           <  2:1074922/90‑1 (MQ=255)                                              cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc                                           <  1:757542/90‑1 (MQ=255)                                               aGACATAATCACTCCTTATAACGCCCCGGAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          >  2:978523/1‑74 (MQ=255)                                               aGACATAATCACTCCTTATAACGCCCCGGAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa                                                          <  1:978523/74‑1 (MQ=255)                                               aGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCg                                          <  2:1141558/90‑1 (MQ=255)                                                  cATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGac                                       <  1:1303224/90‑1 (MQ=255)                                                  cATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGac                                       <  1:16992/90‑1 (MQ=255)                                                   aTAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGaca                                      <  1:531042/90‑1 (MQ=255)                                                   aTAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGaca                                      <  1:451708/90‑1 (MQ=255)                                                      aTCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGacatac                                   >  2:81646/1‑90 (MQ=255)                                                        cACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGacatacat                                 <  1:300006/90‑1 (MQ=255)                                                          cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct                               >  2:460474/1‑90 (MQ=255)                                                          cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct                               >  2:634141/1‑90 (MQ=255)                                                          cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct                               >  2:1149435/1‑90 (MQ=255)                                                           tCCTTATAACGCCCCGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc                             >  2:1263674/1‑88 (MQ=255)                                                           tCCTTATAACGCCCCGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc                             <  1:1263674/88‑1 (MQ=255)                                                            ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc                             <  1:81646/90‑1 (MQ=255)                                                            ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc                             >  2:588174/1‑90 (MQ=255)                                                            ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc                             <  1:939335/90‑1 (MQ=255)                                                              ttATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTtctc                           >  2:47449/1‑90 (MQ=255)                                                                  aaCGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTc                       <  2:666557/90‑1 (MQ=255)                                                                  aaCGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTc                       <  2:1121741/90‑1 (MQ=255)                                                                    cGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg                     <  2:780306/90‑1 (MQ=255)                                                                    cGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg                     <  1:950315/90‑1 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   <  1:605176/90‑1 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:1095232/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:891637/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  2:824053/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:890177/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  2:790025/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  2:757909/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  2:626435/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  2:335693/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:785041/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:511982/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:521978/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc                   >  1:561591/1‑90 (MQ=255)                                                                      ccccGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGt                >  2:1303248/1‑90 (MQ=255)                                                                        ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg                 >  2:557702/1‑90 (MQ=255)                                                                        ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg                 >  2:352935/1‑90 (MQ=255)                                                                        ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg                 >  1:262565/1‑90 (MQ=255)                                                                        ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg                 >  1:916402/1‑90 (MQ=255)                                                                                  tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg                     >  2:1163440/1‑76 (MQ=255)                                                                                  tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg                     <  1:1163440/76‑1 (MQ=255)                                                                                  tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAAc       >  2:221618/1‑90 (MQ=255)                                                                                       tattattattaCGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGTCTGTAGAAGCAACCCATc  <  2:1075720/90‑1 (MQ=255)                                                                                       tattattattaCGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATc  <  2:575619/90‑1 (MQ=255)                                                                                       tattattattaCGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATc  <  1:867507/90‑1 (MQ=255)                                                                                       tattattattaCGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATc  <  1:757909/90‑1 (MQ=255)                                                                                         |                                                                                        CGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAACCCATC  >  NZ_CP009273/4059075‑4059250

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.