| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4059163 = | 79 (1.690) | 3 (0.070) | 3/152 | 3.4 | 4.2% | intergenic (‑37/+6) | yihO/yihP | MFS transporter/MFS transporter |
| ? | NZ_CP009273 | = 4059159 | 66 (1.580) | intergenic (‑33/+10) | yihO/yihP | MFS transporter/MFS transporter | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAAC > NZ_CP009273/4059072‑4059245 | aGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGttt > 2:412511/1‑90 (MQ=255)aGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGttt > 2:38788/1‑90 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 2:1022081/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 2:509365/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt > 1:1137866/1‑90 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 2:1265914/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 1:935196/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 1:127560/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 2:522712/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 2:863739/90‑1 (MQ=255) cGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttatt < 1:815838/90‑1 (MQ=255) ttCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTttattattatta > 2:41378/1‑90 (MQ=255) tCCCGCAGATTCAGTTTTAATGTCAGTGGATGATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTAc > 1:998406/1‑90 (MQ=255) aGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTg < 2:481130/90‑1 (MQ=255) gTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTAc < 2:27879/90‑1 (MQ=255) ttttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACg < 1:876958/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 1:814337/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 2:35200/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 2:1070270/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 1:536354/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 2:882097/90‑1 (MQ=255) tttAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACgg < 2:958205/90‑1 (MQ=255) tAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGc > 2:1315979/1‑90 (MQ=255) tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa < 1:1099641/90‑1 (MQ=255) tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa < 2:40331/90‑1 (MQ=255) tCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa < 2:354741/90‑1 (MQ=255) gcAGTGGATTATGGTCAGACATAATCGCTCCTTATAACGCCCCGCAGGGCGTCCTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa < 2:963823/89‑1 (MQ=255) cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt > 2:516990/1‑90 (MQ=255) cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt > 2:950315/1‑90 (MQ=255) cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt > 1:174762/1‑90 (MQ=255) cAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAt > 1:205878/1‑90 (MQ=255) aGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTGCGGGCTTCTAtc < 1:749873/90‑1 (MQ=255) aGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTAtc < 1:110833/90‑1 (MQ=255) ttATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTcc < 1:1315979/90‑1 (MQ=255) cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc > 2:939335/1‑90 (MQ=255) cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc < 1:757542/90‑1 (MQ=255) cAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGc < 2:1074922/90‑1 (MQ=255) aGACATAATCACTCCTTATAACGCCCCGGAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa > 2:978523/1‑74 (MQ=255) aGACATAATCACTCCTTATAACGCCCCGGAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTa < 1:978523/74‑1 (MQ=255) aGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCg < 2:1141558/90‑1 (MQ=255) cATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGac < 1:1303224/90‑1 (MQ=255) cATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGac < 1:16992/90‑1 (MQ=255) aTAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGaca < 1:531042/90‑1 (MQ=255) aTAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGaca < 1:451708/90‑1 (MQ=255) aTCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGacatac > 2:81646/1‑90 (MQ=255) cACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGacatacat < 1:300006/90‑1 (MQ=255) cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct > 2:634141/1‑90 (MQ=255) cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct > 2:1149435/1‑90 (MQ=255) cTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtct > 2:460474/1‑90 (MQ=255) tCCTTATAACGCCCCGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc > 2:1263674/1‑88 (MQ=255) tCCTTATAACGCCCCGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc < 1:1263674/88‑1 (MQ=255) ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc < 1:939335/90‑1 (MQ=255) ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc > 2:588174/1‑90 (MQ=255) ccTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACAtcttc < 1:81646/90‑1 (MQ=255) ttATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTtctc > 2:47449/1‑90 (MQ=255) aaCGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTc < 2:1121741/90‑1 (MQ=255) aaCGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTc < 2:666557/90‑1 (MQ=255) cGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg < 1:950315/90‑1 (MQ=255) cGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg < 2:780306/90‑1 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 2:757909/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:1095232/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 2:824053/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 2:790025/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:561591/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 2:335693/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:891637/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 2:626435/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:890177/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:511982/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:521978/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc > 1:785041/1‑90 (MQ=255) ccccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGc < 1:605176/90‑1 (MQ=255) ccccGCAGGGCGTCGT‑‑‑TTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGt > 2:1303248/1‑90 (MQ=255) ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg > 2:352935/1‑90 (MQ=255) ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg > 2:557702/1‑90 (MQ=255) ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg > 1:916402/1‑90 (MQ=255) ccGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTg > 1:262565/1‑90 (MQ=255) tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg > 2:1163440/1‑76 (MQ=255) tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAg < 1:1163440/76‑1 (MQ=255) tcgtTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAAc > 2:221618/1‑90 (MQ=255) | AGGCGATTTTTTCCCGCAGATTCAGTTTTAATGTCAGTGGATTATGGTCAGACATAATCACTCCTTATAACGCCCCGCAGGGCGTCGTTTATTATTATTACGCCGTGCGTTTACGGGCTTCTATCTCTTCCACAATGCGGACATACATCTTCTCGTTCAGGCTGTAGAAGCAAC > NZ_CP009273/4059072‑4059245 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |