| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 20563 | NA (NA) | 19 (0.950) | 14/170 | 0.3 | 100% | intergenic (‑55/+252) | BW25113_RS00100/rpsT | IS1‑like element IS1A family transposase/30S ribosomal protein S20 |
| ? | NZ_CP009273 | 481365 = | 0 (0.000) | coding (149/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/20487‑20563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTA > NZ_CP009273/481365‑481435 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGA > 1:60792/1‑90 TAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTC < 2:42026/90‑1 ACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAGGTCGGATT > 1:292039/1‑90 CACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGT > 1:563283/1‑90 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTG < 2:128405/90‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGG > 2:135814/1‑90 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAG < 1:118769/90‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAG < 1:191912/90‑1 CACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAG < 1:536362/90‑1 ACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGA > 2:537430/1‑90 ATCATACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATC > 2:298966/1‑90 ACACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATA < 2:351030/90‑1 CACTAAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATAT > 2:303080/1‑90 AAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGT > 1:13514/1‑90 AAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGT > 1:443019/1‑90 AAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTC > 2:39607/1‑44 AAATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTC < 1:39607/44‑1 AATCAGTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTG < 1:369500/90‑1 GTAAGTTGGCAGCATCACCGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTA < 2:65940/90‑1 AGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/20487‑20563‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTA > NZ_CP009273/481365‑481435 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |