| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 20563 | NA (NA) | 19 (0.950) | 14/170 | 0.3 | 100% | intergenic (‑55/+252) | BW25113_RS00100/rpsT | IS1‑like element IS1A family transposase/30S ribosomal protein S20 |
| ? | NZ_CP009273 | 481365 = | 0 (0.000) | coding (149/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
TTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGC > NZ_CP009273/481284‑481452 | ttttCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTg > 2:287372‑M1/1‑89 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGa > 1:60792‑M2/78‑90 (MQ=255) cacaGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatg < 2:71121‑M1/90‑8 (MQ=255) tagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTc < 2:42026‑M2/19‑1 (MQ=255) gcagGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactc < 2:85877‑M1/90‑12 (MQ=255) agGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactcca < 2:482285‑M1/90‑14 (MQ=255) acagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAGGTCGGAtt > 1:292039‑M2/67‑90 (MQ=255) gTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaactta < 2:214437‑M1/90‑19 (MQ=255) tATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaa < 2:545933‑M1/76‑6 (MQ=255) tATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaa > 1:545933‑M1/1‑71 (MQ=255) tATCATCCACCTCGCTGGGCGAGATTGCAAAACCGGCAGGCGTTACGGGCGGTGCAATCTACTGGCATTTTgggaaaggctccaagttat > 2:248829‑M1/1‑71 (MQ=255) cactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGt > 1:563283‑M2/59‑90 (MQ=255) actggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTg < 2:128405‑M2/33‑1 (MQ=255) ccTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgt > 2:347001‑M1/1‑62 (MQ=255) tCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgttt > 1:536467‑M1/1‑60 (MQ=255) cGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgtttt > 2:314082‑M1/1‑59 (MQ=255) gCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgtttta < 1:74626‑M1/90‑33 (MQ=255) gCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgtttta < 2:450175‑M1/90‑33 (MQ=255) gCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgaccccaacttattgatagtgtttta < 2:527822‑M1/90‑33 (MQ=255) cTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgttttat < 1:356041‑M1/90‑34 (MQ=255) acctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTgg > 2:135814‑M2/50‑90 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAg < 1:536362‑M2/51‑1 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAg < 1:118769‑M2/51‑1 (MQ=255) caccatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAg < 1:191912‑M2/51‑1 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGa > 2:537430‑M2/39‑90 (MQ=255) atcatacactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATc > 2:298966‑M2/36‑90 (MQ=255) gcagcTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgat > 2:166031‑M1/1‑39 (MQ=255) acactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAata < 2:351030‑M2/60‑1 (MQ=255) cactaaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAatat > 2:303080‑M2/30‑90 (MQ=255) gcTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgac > 1:382055‑M1/1‑36 (MQ=255) aaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTc > 2:39607‑M2/26‑44 (MQ=255) aaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTc < 1:39607‑M2/19‑1 (MQ=255) aaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGt > 1:443019‑M2/26‑90 (MQ=255) aaatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGt > 1:13514‑M2/26‑90 (MQ=255) aatcagtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTg < 1:369500‑M2/66‑1 (MQ=255) gtaagttggcagcatcaccGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTa < 2:65940‑M2/71‑1 (MQ=255) cTGGCATTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:135725‑M1/1‑10 (MQ=255) cTGGCATTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 2:65023‑M1/1‑10 (MQ=255) cTGGCATTTTggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttg > 1:191958‑M1/1‑10 (MQ=255) | TTTTCTCACAGCAGGGGGTATCATCCACCTCGCTGGGCGAGATTGCAAAAGCAGCTGGCGTTACGCGCGGTGCAATCTACTGGCATTTTAAAGACAAGTCGGATTTGTTCAGTGAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGC > NZ_CP009273/481284‑481452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |