| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629105 | 0 (0.000) | 38 (1.430) | 20/170 | 0.2 | 100% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
AAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629018‑3629194 | aaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGga < 1:345646‑M1/90‑3 (MQ=255) aGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 2:543986‑M1/90‑4 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCGCCTGCCTGTTTTGgaa < 2:515954‑M1/62‑4 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:98209‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:84864‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:668428‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:177227‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:678631‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:678630‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:335650‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagc < 1:598219‑M1/75‑17 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagc > 2:598219‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa > 1:515954‑M1/1‑59 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 1:180591‑M1/1‑58 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 2:644856‑M1/1‑58 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 1:415970‑M1/1‑58 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGGCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 1:350172‑M1/1‑58 (MQ=255) aCCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggc < 1:679400‑M1/90‑35 (MQ=255) gTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgac > 1:452507‑M1/1‑52 (MQ=255) gTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgac > 2:71521‑M1/1‑52 (MQ=255) gTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcag > 2:38421‑M1/1‑48 (MQ=255) ccAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatt < 2:133390‑M1/90‑48 (MQ=255) aCAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttca > 2:432004‑M1/1‑40 (MQ=255) aGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatt < 2:214941‑M1/90‑53 (MQ=255) aTACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 2:11242‑M1/1‑35 (MQ=255) aCCGATGATTCCCGTCTTCCCCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 1:460510‑M1/90‑58 (MQ=255) aCCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttc < 2:65910‑M1/90‑58 (MQ=255) ccGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttca > 2:43291‑M1/1‑32 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcgggggaattcttctcggctgactcagtcatttcatttcttcatg > 1:472427‑M1/1‑30 (MQ=255) gatgatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatg > 1:569709‑M1/1‑30 (MQ=255) gatTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttttcggctgactcagtcatttcatttcttcatgttt > 2:174202‑M1/1‑27 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:154221‑M1/1‑10 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc < 2:580878‑M1/90‑81 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc < 2:325482‑M1/77‑68 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc > 1:325482‑M1/1‑10 (MQ=255) gcctcTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:215377‑M1/1‑10 (MQ=255) tttGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:11242‑M1/90‑87 (MQ=255) tttGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaa < 1:142992‑M1/90‑87 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:145123‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:78839‑M1/1‑1 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 1:131578‑M1/1‑1 (MQ=255) | AAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629018‑3629194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |