| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 15391 = | NA (NA) | 15 (0.650) | 12/164 | 0.5 | 72.4% | intergenic (+93/‑54) | dnaJ/BW25113_RS00080 | molecular chaperone DnaJ/IS4‑like element IS421 family transposase |
| ? | NZ_CP009273 | = 454255 | 6 (0.250) | intergenic (+99/‑89) | clpX/lon | ATP‑dependent protease ATP‑binding subunit ClpX/endopeptidase La | |||||
CATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTA > NZ_CP009273/454168‑454344 | acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCa < 2:365149‑M1/15‑1 (MQ=255)acgcgaggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCa < 2:47185‑M1/15‑1 (MQ=255) aggcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATAc > 2:62492‑M1/71‑90 (MQ=255) ttAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgct > 1:282916‑M2/1‑81 (MQ=255) gcatcgtcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTg > 2:506492‑M1/69‑90 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta < 2:306632‑M2/90‑11 (MQ=255) tAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgcta > 2:416149‑M2/1‑80 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc < 2:627667‑M1/28‑1 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:557311‑M1/63‑90 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 1:458260‑M1/63‑90 (MQ=255) tcttaacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTAc > 2:489945‑M1/63‑90 (MQ=255) aCCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaa > 2:154327‑M2/1‑74 (MQ=255) aacgaggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGt < 2:248960‑M1/32‑1 (MQ=255) aaaaGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggt < 1:77154‑M2/90‑21 (MQ=255) ggcaccgaggcgtcgcattcttcagatggttcatcccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATa < 2:107025‑M1/37‑1 (MQ=255) ggcaccgaggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATa < 2:283174‑M1/37‑1 (MQ=255) gATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtatt > 1:52590‑M2/1‑61 (MQ=255) ggcgtcgcattcttcagatggttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGt > 1:234602‑M1/46‑90 (MQ=255) aTCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcct > 1:495765‑M2/1‑55 (MQ=255) aTCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcct > 1:593988‑M2/1‑55 (MQ=255) ccccTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgata > 1:297209‑M2/1‑51 (MQ=255) ttcaacccttaagttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTg < 2:288740‑M1/66‑1 (MQ=255) tctcGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaat > 2:7268‑M2/1‑30 (MQ=255) ctcGGCGTTGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaatt > 2:591604‑M2/1‑29 (MQ=255) agttagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCg > 1:248960‑M1/14‑90 (MQ=255) tagcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGaa < 1:458384‑M1/80‑1 (MQ=255) ttGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca < 1:619772‑M2/90‑69 (MQ=255) ttGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca < 1:329119‑M2/90‑69 (MQ=255) ttGAATGTGGGGGAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctca < 1:38307‑M2/90‑69 (MQ=255) gcgcttatGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAAt < 2:207044‑M1/82‑1 (MQ=255) gAAACATCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtc < 2:302667‑M2/90‑81 (MQ=255) aaaCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagaga < 1:107025/90‑1 (MQ=255) aaCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagag > 1:53440/1‑90 (MQ=255) aaCATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAagagag > 1:450667/1‑90 (MQ=255) cATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCa > 2:107707/1‑55 (MQ=255) cATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCa < 1:107707/55‑1 (MQ=255) tCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaat < 1:519536‑M2/90‑87 (MQ=255) tCCCataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaat < 2:142913‑M2/90‑87 (MQ=255) tCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGct > 2:588011/1‑90 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 2:38307‑M2/1‑2 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 1:142913‑M2/1‑2 (MQ=255) ccataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattc > 1:52474‑M2/1‑2 (MQ=255) cataagcgctaacttaagggttgtggtattacgcctgatatgatttaacgtgccgatgaattactctcacgataactggtcagcaattct < 2:34301‑M2/90‑90 (MQ=255) | CATACAATTAGTTAACCAAAAAGGGGGGATTTTATCTCCCCTTTAATTTTTCCTCTATTCTCGGCGTTGAATGTGGGGGAAACATCCCCATATACTGACGTACATGTTAATAGATGGCGTGAAGCACAGTCGTGTCATCTGATTACCTGGCGGAAATTAAACTAAGAGAGAGCTCTA > NZ_CP009273/454168‑454344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |