Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 3635965 3636096 132 3 [1] [1] 2 rsmJ 16S rRNA (guanine(1516)‑N(2))‑methyltransferase RsmJ

CCGCATCCGCATAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGC  >  NZ_CP009273/3636081‑3636186
                |                                                                                         
ccgcatccgcatAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTg                  <  2:245731/90‑1 (MQ=255)
                aCGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGc  >  2:39212/1‑90 (MQ=255)
                |                                                                                         
CCGCATCCGCATAACCACGCGCCAGGCCGTCGTCGAGTAGCGCGGCAACCACTGGATTACGCTCCAGCATCCGCACGCGGCAGCCGACTGAAGCCAGTACAAAGGC  >  NZ_CP009273/3636081‑3636186

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: