New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 3629105	0 (0.000)	17 (0.780)	13/168	0.4	100%	coding (905/1053 nt)	yhiM	DUF2776 domain‑containing protein
	?	NZ_CP009273	3645397 =	NA (NA)					pseudogene (747/747 nt)	BW25113_RS18155	hypothetical protein

AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3629016‑3629105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC  >  NZ_CP009273/3645397‑3645485                                                                                                                                                                                     AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG                                                                                           >  1:121490/1‑90    AGTCTGGCTAATGGCCCTGGTATGGGGACGTACCTTTTCGTTAGCCAACAGAATACCCATGATTCCCGTCTTCACCTGCCTGTTTTGGAA                                                                                        <  2:367604/90‑1       CTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGT                                                                                     <  1:364787/90‑1        TGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTG                                                                                    >  2:493874/1‑90                         ATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAAT                                                                   >  1:481964/1‑90                                CGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                                            >  1:545929/1‑90                                CGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTC                                                            >  2:139895/1‑90                                 GTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCG                                                           >  1:363227/1‑90                                 GTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAA                                                                                        >  1:373415/1‑61                                 GTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAA                                                                                        <  2:373415/61‑1                                         TCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCCCCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC                                                   <  2:422195/90‑1                                          CGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCA                                                  >  1:404297/1‑90                                                    CAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT                                        >  2:435334/1‑90                                                        ATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT                                    >  1:12432/1‑90                                                        ATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCT                                    >  2:170252/1‑90                                                                            CACCTGCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT                >  1:148422/1‑90                                                                                 GCCTGTTTTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCC           >  2:556039/1‑90                                                                                        TTGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAT    <  2:404297/90‑1                                                                                          GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC  >  2:78757/1‑90                                                                                                                                                                                     AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NZ_CP009273/3629016‑3629105 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGC  >  NZ_CP009273/3645397‑3645485

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.