| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3629105 | 0 (0.000) | 17 (0.780) | 13/168 | 0.4 | 100% | coding (905/1053 nt) | yhiM | DUF2776 domain‑containing protein |
| ? | NZ_CP009273 | 3645397 = | NA (NA) | pseudogene (747/747 nt) | BW25113_RS18155 | hypothetical protein | |||||
AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629016‑3629194 | aaaaGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTG > 1:121490‑M1/1‑90 (MQ=255) aGTCTGGCTAATGGCCCTGGTATGGGGACGTACCTTTTCGTTAGCCAACAGAATACCCATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 2:367604‑M1/90‑4 (MQ=255) cTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggt < 1:364787‑M1/90‑7 (MQ=255) tGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtg > 2:493874‑M1/1‑83 (MQ=255) aTGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaat > 1:481964‑M1/1‑66 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 1:545929‑M1/1‑59 (MQ=255) cGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctc > 2:139895‑M1/1‑59 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcg > 1:363227‑M1/1‑58 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa > 1:373415‑M1/1‑58 (MQ=255) gTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaa < 2:373415‑M1/61‑4 (MQ=255) tCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCCCCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactc < 2:422195‑M1/90‑41 (MQ=255) cGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactca > 1:404297‑M1/1‑49 (MQ=255) cAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcat > 2:435334‑M1/1‑39 (MQ=255) aTACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 1:12432‑M1/1‑35 (MQ=255) aTACCGATGATTCCCGTCTTCACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttct > 2:170252‑M1/1‑35 (MQ=255) cACCTGCCTGTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt > 1:148422‑M1/1‑15 (MQ=255) gcctgTTTTGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcc > 2:556039‑M1/1‑10 (MQ=255) ttGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaat < 2:404297‑M1/90‑88 (MQ=255) ggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc > 2:78757‑M1/1‑1 (MQ=255) | AAAAGTCTGGCTACTGGCACTGGTATGGAGACGTACCTGTTCGTTAGCCAACAGAATACCGATGATTCCCGTCTTCACCTGCCTGTTTTGCCTTTTCCTGGCATCGTTTCTTGCGGAAATGGCGCAGACCGACATGGGATATTTTATTCCTTCGCGAGTTCTGGTCGGTTTGGGAGCGG > NZ_CP009273/3629016‑3629194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |