New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2115728300 (1.010)3 (0.010) 3/172 43.5 1.2% coding (701/1281 nt) wcaK colanic acid biosynthesis protein
?NC_000913 = 2454891 240 (0.940)intergenic (‑57/+146) sixA/fadJ phosphohistidine phosphatase/fused enoyl‑CoA hydratase and epimerase and isomerase/3‑hydroxyacyl‑CoA dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 274 total aligned reads displayed.

GCATCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTACATTTTGA  >  NC_000913/2454791‑2454991
                                                                                                    |                                                                                                     
gcATCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGagaa                                                                                                       >  1:2706136/1‑101 (MQ=255)
 cATCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATACTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGagaaa                                                                                                      <  1:896123/101‑1 (MQ=255)
  aTCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCCGagaaag                                                                                                     >  2:1373865/1‑101 (MQ=255)
  aTCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGagaaag                                                                                                     >  2:5531986/1‑101 (MQ=255)
    cGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGagaaagaa                                                                                                   <  1:3999620/101‑1 (MQ=255)
    cGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGagaaagaa                                                                                                   >  2:1917207/1‑101 (MQ=255)
      aGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCAAATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGaaaa                                                                                                 >  2:5831233/1‑101 (MQ=255)
          cTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑t                                                                                            <  1:4108805/101‑1 (MQ=255)
           tGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑Tg                                                                                           >  2:674339/1‑101 (MQ=255)
             cGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGCTTTCTTTCATCTGAAACCAGAGAAAGAAAAAGG‑TGGc                                                                                         >  2:6032557/1‑101 (MQ=255)
              gTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTTACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAAAAG‑TGGcc                                                                                        >  2:1756506/1‑101 (MQ=255)
              gTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGcc                                                                                        <  1:686763/101‑1 (MQ=255)
              gTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGcc                                                                                        <  1:1550078/101‑1 (MQ=255)
              gTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACAG‑TGGcc                                                                                        >  2:2086848/1‑101 (MQ=255)
                cGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCgg                                                                                      <  1:2888876/101‑1 (MQ=255)
                cGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCgg                                                                                      >  1:4466340/1‑101 (MQ=255)
                cGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCgg                                                                                      >  1:6701343/1‑101 (MQ=255)
                  ccGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCa                                                                                    >  1:5731806/1‑101 (MQ=255)
                   cGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTTAAACCAGAGAAAGAAAACGT‑GGGCCGGCAt                                                                                   >  1:1211552/1‑101 (MQ=255)
                   cGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCAt                                                                                   >  1:4547550/1‑101 (MQ=255)
                     tGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATtg                                                                                 >  1:5575185/1‑101 (MQ=255)
                     tGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCCCTTTCTTTTCTCTTGAACCAGAGAAAGAAAAAGG‑CGGCCggggttt                                                                                 >  1:252015/1‑96 (MQ=255)
                       aCGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATtgtg                                                                               >  2:3050575/1‑101 (MQ=255)
                          cATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCCCTTTCTTTTATCTGAAACCCGAGAAAAAAAAAGG‑GGGGCGGAATTGTGccc                                                                            >  1:1372087/1‑100 (MQ=255)
                          cATGAGAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCt                                                                            >  2:5675409/1‑101 (MQ=255)
                           aTGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCtt                                                                           >  1:6373101/1‑101 (MQ=255)
                            tGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCAGTTTTCTTTCATCTTAAACCAGAGAAAGAAAACGG‑TGGCCGGTATTTTGCCttc                                                                          >  2:658489/1‑100 (MQ=255)
                              aTAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATc                                                                        >  2:4232505/1‑101 (MQ=255)
                               tAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATcc                                                                       >  1:1084690/1‑101 (MQ=255)
                               tAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATcc                                                                       >  1:5476534/1‑101 (MQ=255)
                                aaaaaCTTGCATATTGCCCCTCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCa                                                                      <  2:5074607/101‑1 (MQ=255)
                                  aaaCTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCAtt                                                                    <  1:5666644/101‑1 (MQ=255)
                                    aCTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTTATCTGAAAACAGAGAAAGAAAACGG‑GGGCCGGAATTGTGACTTATCAAttta                                                                  >  2:3964569/1‑99 (MQ=255)
                                      ttGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCAcc                                                                <  1:5388262/101‑1 (MQ=255)
                                       tGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCg                                                               >  1:610550/1‑101 (MQ=255)
                                       tGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGA‑TGGCCGGCATTGTGCCTTATCCATTCACCg                                                               <  1:1941924/101‑1 (MQ=255)
                                         cATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGGCGGCATTGTGCCTTATCCATTCACCGaa                                                             >  1:5149020/1‑101 (MQ=255)
                                         cATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGaa                                                             <  2:2934666/101‑1 (MQ=255)
                                         cATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGaa                                                             >  2:4402883/1‑101 (MQ=255)
                                          atatTGCACCGCTTTTGTTAACCAGATTCGCCCGGTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑GGGGCGGCACTTTGCCCTTTCCATTCACCCaaa                                                            >  2:4689950/1‑100 (MQ=255)
                                             ttGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGaa                                                         <  2:6353045/101‑1 (MQ=255)
                                              tGCCCCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAACCGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGaaa                                                        <  2:6505594/101‑1 (MQ=255)
                                               gctccGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAAAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAAc                                                       <  2:6208086/98‑1 (MQ=255)
                                               gCAGCGCGTTTGTTAACCAGATTCGCGCTTTTTCTGTCATCTGAAAGCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAAc                                                       >  2:6910751/1‑101 (MQ=255)
                                                  ccGCTTTTGTTAACCAGATTCGCCCGGTTTTTTTTATCTTCAAACCGGGAAAAAAAAAAG‑GGGCCGGCAATGTGCCTTATCCCATGACCGGATGaaaaccg                                                    >  2:3701119/1‑97 (MQ=255)
                                                   cGCTTTTGTTAACCAGATTCGCCCGTGTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCAAATGAAACGCtt                                                   >  2:3484240/1‑100 (MQ=255)
                                                    gCTTTTGTTACCCAGATTCGCCCGTTTCCTTTCATCCGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGt                                                  <  2:451203/101‑1 (MQ=255)
                                                    gCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGt                                                  <  1:5002791/101‑1 (MQ=255)
                                                    gCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGt                                                  <  2:3693207/101‑1 (MQ=255)
                                                    gCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGt                                                  <  2:5382624/101‑1 (MQ=255)
                                                     cTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGtt                                                 >  2:6863346/1‑101 (MQ=255)
                                                       ttttttTACCAGTATCCCCCCTTTTCCTTCCTTTTAAACCCAAAAAAGAAAAAGGTTGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGttt                                                <  2:4803147/101‑1 (MQ=255)
                                                         tGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGtttttt                                             <  1:656237/101‑1 (MQ=255)
                                                           ttAACCAGATTCGCCCGTTTTCTTTCATCTTAAAGCAGAGAAAGGAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTAc                                           >  2:6938680/1‑101 (MQ=255)
                                                           ttAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTAc                                           >  1:6815745/1‑101 (MQ=255)
                                                             aaCCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCt                                         <  2:4039896/101‑1 (MQ=255)
                                                              aCCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑GGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTc                                        >  2:1832390/1‑101 (MQ=255)
                                                               ccAGATTCGCCCTTTTTCTTTCATCTGAAACCAGAGAAAGAAAGGGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCa                                       <  1:4882495/101‑1 (MQ=255)
                                                                cAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCaa                                      <  2:590819/101‑1 (MQ=255)
                                                                 aGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAAt                                     <  2:3890275/101‑1 (MQ=255)
                                                                  ggttCGCCCGTTTTCTTTCATCGGAAACCAGAGAAAGAAAACGG‑AGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATg                                    >  2:4619018/3‑101 (MQ=255)
                                                                  gATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATg                                    <  2:1468048/101‑1 (MQ=255)
                                                                  gATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATg                                    >  1:739742/1‑101 (MQ=255)
                                                                   aTTCGCCCGTTTTCTTTTATCTGAAACCAGAGAAAGAAAGCGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATgg                                   <  1:1897558/101‑1 (MQ=255)
                                                                   aTTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATgg                                   >  1:5743799/1‑101 (MQ=255)
                                                                   aTTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATgg                                   <  2:2784814/101‑1 (MQ=255)
                                                                    ttCGCCCGTTTTCTTTCTTCTAAAACTAGAAAAATAAAGCGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGc                                  <  2:1257993/101‑1 (MQ=255)
                                                                    ttCGCCCGTGTTCTTTCATCTGAAACCAGAGAAAGAAACCGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGc                                  <  1:1782802/101‑1 (MQ=255)
                                                                     tCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCg                                 >  2:626082/1‑101 (MQ=255)
                                                                      cGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGt                                <  1:3159215/101‑1 (MQ=255)
                                                                      cGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGt                                <  2:1736934/101‑1 (MQ=255)
                                                                        cccGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTaa                              >  1:2170565/1‑101 (MQ=255)
                                                                         ccGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAg                             <  2:5271557/101‑1 (MQ=255)
                                                                          cGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGt                            <  2:4136531/101‑1 (MQ=255)
                                                                           gTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGta                           <  2:4359193/101‑1 (MQ=255)
                                                                            ttttCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGtat                          <  1:6204094/101‑1 (MQ=255)
                                                                            ttttCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGtat                          <  1:2086848/101‑1 (MQ=255)
                                                                             tttctttcATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGtata                         >  2:3186438/1‑101 (MQ=255)
                                                                             tttctttcATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGtata                         >  1:3773033/1‑101 (MQ=255)
                                                                              ttctttcATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAg                        >  1:3507702/1‑101 (MQ=255)
                                                                              ttctttcATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAg                        <  1:859179/101‑1 (MQ=255)
                                                                                   tcATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAat                   >  1:431678/1‑101 (MQ=255)
                                                                                    cATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAata                  >  1:1409043/1‑101 (MQ=255)
                                                                                     aTCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAatat                 >  2:726973/1‑101 (MQ=255)
                                                                                      tCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATg                <  2:2491288/101‑1 (MQ=255)
                                                                                       cTGAACCCAGAAAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGc               <  2:2409990/101‑1 (MQ=255)
                                                                                       cTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGc               <  2:5476534/101‑1 (MQ=255)
                                                                                       cTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGc               >  1:6599618/1‑101 (MQ=255)
                                                                                        tGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCg              >  1:5326529/1‑101 (MQ=255)
                                                                                         gAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGt             >  1:2568408/1‑101 (MQ=255)
                                                                                         gAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGt             >  1:966465/1‑101 (MQ=255)
                                                                                           aaCCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGttt           <  2:5329389/101‑1 (MQ=255)
                                                                                           aaCCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGttt           <  1:2984460/101‑1 (MQ=255)
                                                                                           aaCCAGAAAAAGAAACCGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGttt           <  1:4802020/101‑1 (MQ=255)
                                                                                            aCCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTa          >  2:5550851/1‑101 (MQ=255)
                                                                                             ccAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGCAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTAc         >  1:3863686/1‑101 (MQ=255)
                                                                                             ccAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTAc         >  2:2306673/1‑101 (MQ=255)
                                                                                               agagAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTAcct       <  1:6963004/101‑3 (MQ=255)
                                                                                                   aaagaaaACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTACATTTTg   >  2:4962570/1‑101 (MQ=255)
                                                                                                   aaagaaaACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTACATTTTg   >  1:1026388/1‑101 (MQ=255)
                                                                                                    |                                                                                                     
GCATCGAGGGCTGCGTCGCCGTGACGCATGATAAAAACTTGCATATTGCACCGCTTTTGTTAACCAGATTCGCCCGTTTTCTTTCATCTGAAACCAGAGAAAGAAAACGG‑TGGCCGGCATTGTGCCTTATCCATTCACCGAATGAAACGCTGTTTTTTACCTCAATGGCGTAAGTATAGTCAATATGCGTTTACATTTTGA  >  NC_000913/2454791‑2454991

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.