mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,191 | 0 | A | C | 20.8% | 78.8 / 18.4 | 48 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 38 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 149 (1.070) | 20 (0.150) | 18/488 | 6.2 | 12.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 144 (1.100) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 3640591 | 124 (0.890) | 6 (0.050) | 6/476 | 10.5 | 4.8% | intergenic (+46/‑271) | uspA/dtpB | universal stress global stress response regulator/dipeptide/tripeptide:H(+) symporter DtpB |
| ? | NC_000913 | = 3640569 | 124 (0.980) | intergenic (+24/‑293) | uspA/dtpB | universal stress global stress response regulator/dipeptide/tripeptide:H(+) symporter DtpB | |||||
| * | ? | NC_000913 | 2765420 = | 88 (0.630) | 4 (0.030) | 4/432 | 11.0 | 5.4% | intergenic (‑267/+93) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM |
| ? | NC_000913 | = 2765411 | 66 (0.570) | intergenic (‑258/+102) | abpA/yfjM | CP4‑57 prophage; anti‑bacteriophage protein/CP4‑57 prophage; protein YfjM | |||||
| * | ? | NC_000913 | 4295832 = | NA (NA) | 5 (0.040) | 4/442 | 11.2 | NA | intergenic (+38/+604) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| ? | NC_000913 | = 4296394 | NA (NA) | intergenic (+600/+42) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO | |||||
| * | ? | NC_000913 | = 3091097 | 121 (0.870) | 5 (0.040) | 5/502 | 11.4 | 4.0% | intergenic (+43/‑37) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase |
| ? | NC_000913 | = 3091103 | 121 (0.900) | intergenic (+49/‑31) | endA/rsmE | DNA‑specific endonuclease I/16S rRNA m(3)U1498 methyltransferase | |||||
| * | ? | NC_000913 | = 2521359 | 119 (0.860) | 3 (0.030) | 3/422 | 11.6 | 3.0% | intergenic (+31/+234) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR |
| ? | NC_000913 | 2521516 = | NA (NA) | intergenic (+188/+77) | lysV/xapR | tRNA‑Lys/DNA‑binding transcriptional activator XapR | |||||
| * | ? | NC_000913 | = 1080420 | 112 (0.810) | 5 (0.040) | 4/506 | 12.1 | 4.0% | coding (1116/1509 nt) | putP | proline:Na(+) symporter |
| ? | NC_000913 | = 3430675 | 130 (0.960) | coding (164/819 nt) | aroE | shikimate dehydrogenase | |||||
| * | ? | NC_000913 | 774348 = | 105 (0.760) | 4 (0.030) | 4/504 | 12.1 | 3.6% | coding (40/294 nt) | ybgE | cyd operon protein YbgE |
| ? | NC_000913 | 774369 = | 112 (0.830) | coding (61/294 nt) | ybgE | cyd operon protein YbgE | |||||
| * | ? | NC_000913 | = 555547 | 123 (0.890) | 4 (0.030) | 4/504 | 12.1 | 3.3% | coding (937/1386 nt) | cysS | cysteine‑‑tRNA ligase |
| ? | NC_000913 | = 555600 | 118 (0.880) | coding (990/1386 nt) | cysS | cysteine‑‑tRNA ligase | |||||
| * | ? | NC_000913 | 1840635 = | 138 (0.990) | 4 (0.030) | 4/508 | 12.2 | 3.0% | coding (1169/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase |
| ? | NC_000913 | 1840666 = | 127 (0.940) | coding (1200/1308 nt) | ynjE | molybdopterin synthase sulfurtransferase | |||||