mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 39.5% | 42.4 / 19.8 | 43 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4542690 | 44 (0.460) | 4 (0.040) | 4/486 | 9.6 | 6.5% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 72 (0.780) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 1207793 | 16 (0.170) | 4 (0.040) +G |
4/502 | 9.8 | 28.6% | coding (293/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209613 | 4 (0.040) | pseudogene (43/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 4594494 = | 100 (1.040) | 3 (0.030) | 3/488 | 10.2 | 3.8% | coding (229/1362 nt) | lgoT | galactonate:H(+) symporter |
| ? | NC_000913 | 4597749 = | 57 (0.610) | coding (1693/2292 nt) | opgB | phosphoglycerol transferase I | |||||
| * | ? | NC_000913 | 4382726 = | 106 (1.100) | 3 (0.030) | 3/484 | 10.2 | 2.7% | coding (84/978 nt) | epmA | EF‑P‑lysine lysyltransferase |
| ? | NC_000913 | 4383265 = | 113 (1.230) | coding (623/978 nt) | epmA | EF‑P‑lysine lysyltransferase | |||||
| * | ? | NC_000913 | 3924052 = | 87 (0.910) | 3 (0.030) | 3/484 | 10.2 | 3.3% | coding (1582/1890 nt) | mnmG | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG |
| ? | NC_000913 | 3924207 = | 94 (1.020) | coding (1427/1890 nt) | mnmG | 5‑carboxymethylaminomethyluridine‑tRNA synthase subunit MnmG | |||||
| * | ? | NC_000913 | 3817574 = | 126 (1.310) | 3 (0.030) | 3/486 | 10.2 | 2.4% | intergenic (+35/‑186) | yicC/dinD | UPF0701 family protein YicC/DNA damage‑inducible protein D |
| ? | NC_000913 | 3817604 = | 118 (1.280) | intergenic (+65/‑156) | yicC/dinD | UPF0701 family protein YicC/DNA damage‑inducible protein D | |||||
| * | ? | NC_000913 | = 1742580 | 70 (0.730) | 3 (0.030) | 3/486 | 10.2 | 4.2% | intergenic (+19/+21) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase/riboflavin synthase |
| ? | NC_000913 | = 1742585 | 70 (0.760) | intergenic (+24/+16) | cfa/ribC | cyclopropane fatty acyl phospholipid synthase/riboflavin synthase | |||||
| * | ? | NC_000913 | = 1033307 | 69 (0.720) | 3 (0.030) | 3/488 | 10.2 | 4.0% | coding (54/1794 nt) | hyaB | hydrogenase 1 large subunit |
| ? | NC_000913 | = 1033479 | 79 (0.850) | coding (226/1794 nt) | hyaB | hydrogenase 1 large subunit | |||||
| * | ? | NC_000913 | 223366 = | 128 (1.330) | 3 (0.030) | 3/488 | 10.2 | 2.4% | coding (534/576 nt) | gmhB | D‑glycero‑beta‑D‑manno‑heptose‑1,7‑bisphosphate 7‑phosphatase |
| ? | NC_000913 | 223817 = | NA (NA) | noncoding (47/1542 nt) | rrsH | 16S ribosomal RNA | |||||
| * | ? | NC_000913 | = 4162839 | 103 (1.070) | 4 (0.040) | 3/490 | 10.3 | 3.8% | coding (432/1101 nt) | trmA | tRNA m(5)U54 methyltransferase |
| ? | NC_000913 | = 4162849 | 101 (1.080) | coding (422/1101 nt) | trmA | tRNA m(5)U54 methyltransferase | |||||