mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 129,798 | A→T | 9.1% | I488N (ATC→AAC) | yacH ← | DUF3300 domain‑containing protein YacH |
| RA | 238,472 | C→G | 7.1% | A89P (GCC→CCC) | ykfM ← | uncharacterized protein YkfM |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 349,859 | C→G | 5.0% | intergenic (+287/‑153) | prpB → / → prpC | 2‑methylisocitrate lyase/2‑methylcitrate synthase |
| RA | 1,466,210 | G→A | 6.1% | pseudogene (819/2518 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,529,175 | T→C | 8.5% | pseudogene (1286/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,180 | T→C | 8.2% | pseudogene (1291/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,185 | C→T | 8.1% | pseudogene (1296/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,203 | C→A | 10.8% | pseudogene (1314/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,529,218 | C→T | 21.5% | pseudogene (1329/2049 nt) | rhsE → | RhsE protein in rhs element |
| RA | 1,616,197 | C→A | 5.8% | V145V (GTC→GTA) | yneK → | protein YneK |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,103,900 | T→C | 5.7% | H296H (CAT→CAC) | mutY → | adenine DNA glycosylase |
| RA | 3,253,930 | C→A | 5.6% | W95C (TGG→TGT) | yhaJ ← | DNA‑binding transcriptional activator YhaJ |
| RA | 3,560,455:1 | +G | 93.8% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,688,287 | A→C | 15.0% | V296G (GTG→GGG) | bcsC ← | cellulose biosynthesis protein BcsC |
| RA | 3,815,809 | Δ1 bp | 6.1% | intergenic (‑41/+54) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
| RA | 3,815,822 | T→G | 9.4% | intergenic (‑54/+41) | pyrE ← / ← rph | orotate phosphoribosyltransferase/truncated RNase PH |
| JC | 3,815,859 | Δ82 bp | 10.9% | [rph] | [rph] | |
| RA | 4,184,809 | G→T | 41.4% | G1189C (GGT→TGT) | rpoB → | RNA polymerase subunit beta |
| RA | 4,296,060 | C→T | 23.2% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,190 | A→G | 29.2% | intergenic (+396/+246) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,191 | A→C | 25.5% | intergenic (+397/+245) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 82 (0.720) | 32 (0.300) | 27/458 | NT | 30.0% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 73 (0.690) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 82 (0.720) | 52 (0.490) | 39/458 | NT | 41.0% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 73 (0.690) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 68 (0.610) | 58/482 | NT | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 4542690 | 19 (0.170) | 3 (0.030) | 3/472 | NT | 6.2% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 73 (0.670) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||