mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 41.0% | 47.1 / 30.1 | 40 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,296,286 | 0 | C | T | 21.4% | 82.8 / 17.9 | 42 | intergenic (+492/+150) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Marginal new junction evidence (lowest skew 10 of 22 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 45 (0.310) | 39/504 | 3.4 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1207805 | 144 (0.970) | 30 (0.220) | 25/480 | 5.4 | 19.5% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 113 (0.810) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1207790 = | 147 (0.990) | 24 (0.170) | 23/480 | 5.9 | 15.9% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 116 (0.830) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1457975 | 111 (0.750) | 6 (0.040) | 6/492 | 12.1 | 5.3% | coding (479/768 nt) | paaF | putative 2,3‑dehydroadipyl‑CoA hydratase |
| ? | NC_000913 | = 1457986 | 106 (0.740) | coding (490/768 nt) | paaF | putative 2,3‑dehydroadipyl‑CoA hydratase | |||||
| * | ? | NC_000913 | = 4405038 | 180 (1.210) | 4 (0.030) | 4/500 | 13.5 | 2.2% | coding (352/1299 nt) | purA | adenylosuccinate synthetase |
| ? | NC_000913 | = 4405046 | 179 (1.230) | coding (360/1299 nt) | purA | adenylosuccinate synthetase | |||||
| * | ? | NC_000913 | = 4309625 | 162 (1.090) | 4 (0.030) | 4/496 | 13.5 | 2.5% | coding (1356/1533 nt) | alsA | D‑allose ABC transporter ATP binding subunit |
| ? | NC_000913 | = 4309649 | 161 (1.120) | coding (1332/1533 nt) | alsA | D‑allose ABC transporter ATP binding subunit | |||||
| * | ? | NC_000913 | 2923959 = | 147 (0.990) | 4 (0.030) | 4/508 | 13.7 | 2.9% | coding (155/330 nt) | yqcC | DUF446 domain‑containing protein YqcC |
| ? | NC_000913 | 2923981 = | 125 (0.850) | coding (133/330 nt) | yqcC | DUF446 domain‑containing protein YqcC | |||||
| * | ? | NC_000913 | = 4131226 | 154 (1.070) | 15 (0.100) +GGTAA |
3/488 | 14.1 | 8.8% | coding (1392/2433 nt) | metL | fused aspartate kinase/homoserine dehydrogenase 2 |
| ? | NC_000913 | 4131227 = | 160 (1.080) | coding (1393/2433 nt) | metL | fused aspartate kinase/homoserine dehydrogenase 2 | |||||
| * | ? | NC_000913 | = 3868038 | 147 (1.010) | 7 (0.050) +GGCCA |
3/490 | 14.1 | 4.5% | coding (311/333 nt) | yidQ | DUF1375 domain‑containing putative lipoprotein YidQ |
| ? | NC_000913 | 3868039 = | 154 (1.040) | coding (312/333 nt) | yidQ | DUF1375 domain‑containing putative lipoprotein YidQ | |||||
| * | ? | NC_000913 | 699546 = | 118 (0.790) | 3 (0.020) | 3/492 | 14.1 | 2.5% | intergenic (‑369/+28) | asnB/umpH | asparagine synthetase B/UMP phosphatase |
| ? | NC_000913 | 699570 = | 116 (0.810) | intergenic (‑393/+4) | asnB/umpH | asparagine synthetase B/UMP phosphatase | |||||