| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,176,353 | (GCA)4→3 | coding (479‑481/828 nt) | cpdA ← | 3',5' cAMP phosphodiesterase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3176344 | 3176346 | 3 | 29 [0] | [0] 31 | cpdA | 3',5' cAMP phosphodiesterase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3176347 = | 0 (0.000) | 29 (0.860) | 24/242 | 0.6 | 100% | coding (487/828 nt) | cpdA | 3',5' cAMP phosphodiesterase |
| ? | NC_000913 | = 3176343 | 0 (0.000) | coding (491/828 nt) | cpdA | 3',5' cAMP phosphodiesterase | |||||
TCCAGCTCCTGATGAATATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT > NC_000913/3176208‑3176493 | agatccagctcctgatgaatatgaccgcacagcaagtatttgacgtgcggaaacttcgccagcacggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCaa < 4:125289‑M1/10‑1 (MQ=255) aatatgaccgcacagcaagtatttgacgtgcggaaacttcgccagcacggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGgc > 1:106916‑M1/123‑148 (MQ=255) tttgacgtgcggaaacttcgccagcacggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGtt > 8:21095‑M1/102‑140 (MQ=255) tttgacgtgcggaaacttcgccagcacggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGtt < 7:21095‑M1/39‑1 (MQ=255) cgccagcacggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGaaa > 3:125289‑M1/84‑147 (MQ=255) acggtatccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCgctcag < 2:87222‑M1/73‑1 (MQ=255) atccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCTGCCa > 6:122110‑M1/72‑123 (MQ=255) atccagttcgcccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCa < 5:122110‑M1/52‑1 (MQ=255) cccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGgc < 6:84485‑M1/26‑1 (MQ=255) cccgcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGgc > 5:84485‑M1/62‑87 (MQ=255) gcgttacgcagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGc < 5:35619‑M1/90‑1 (MQ=255) cagactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCt > 1:87222‑M1/51‑149 (MQ=255) agactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAac < 7:115621‑M1/95‑1 (MQ=255) agactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAac > 8:115621‑M1/50‑144 (MQ=255) gactgtgttgatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTgg > 6:35619‑M1/49‑149 (MQ=255) gatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTg < 5:163604‑M1/100‑1 (MQ=255) gatcgagccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTg > 6:163604‑M1/40‑139 (MQ=255) ccaactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGa < 2:121121‑M1/117‑1 (MQ=255) aactacagcccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGAtt < 2:91005‑M1/119‑1 (MQ=255) aactacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGAtt < 8:74818‑M1/119‑1 (MQ=255) tacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTgg < 6:42920‑M1/101‑1 (MQ=255) tacaacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTgg > 5:42920‑M1/28‑128 (MQ=255) caacccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGc > 1:121121‑M1/26‑147 (MQ=255) cccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGgccaatt > 4:66069‑M1/23‑58 (MQ=255) cccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGgccaatt < 3:66069‑M1/39‑4 (MQ=255) cccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCa > 2:25016‑M1/23‑146 (MQ=255) cccgcaggtagcggatgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCa < 1:25016‑M1/124‑1 (MQ=255) atgatgatGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAaca > 1:91005‑M1/9‑149 (MQ=255) atGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGCCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCt < 2:191683‑M1/147‑1 (MQ=255) GCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGc < 2:47784‑M1/122‑1 (MQ=255) GCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGc > 1:47784‑M1/1‑122 (MQ=255) | TCCAGCTCCTGATGAATATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGCGCT > NC_000913/3176208‑3176493 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |