| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 3,176,353 | (GCA)4→3 | coding (479‑481/828 nt) | cpdA ← | 3',5' cAMP phosphodiesterase |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3176344 | 3176346 | 3 | 29 [0] | [0] 31 | cpdA | 3',5' cAMP phosphodiesterase |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3176347 = | 0 (0.000) | 29 (0.860) | 24/242 | 0.6 | 100% | coding (487/828 nt) | cpdA | 3',5' cAMP phosphodiesterase |
| ? | NC_000913 | = 3176343 | 0 (0.000) | coding (491/828 nt) | cpdA | 3',5' cAMP phosphodiesterase | |||||
AGATCCAGCTCCTGATGAATATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGC > NC_000913/3176205‑3176490 | agaTCCAGCTCCTGATGAATATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaa < 4:125289‑M2/149‑11 (MQ=255) aaTATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggc > 1:106916‑M2/1‑122 (MQ=255) tttGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtt > 8:21095‑M2/1‑101 (MQ=255) tttGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtt < 7:21095‑M2/140‑40 (MQ=255) cGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaa > 3:125289‑M2/1‑83 (MQ=255) aCGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcag < 2:87222‑M2/149‑74 (MQ=255) aTCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttcctgcca > 6:122110‑M2/1‑71 (MQ=255) aTCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagcca < 5:122110‑M2/123‑53 (MQ=255) cccGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggc < 6:84485‑M2/87‑27 (MQ=255) cccGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggc > 5:84485‑M2/1‑61 (MQ=255) gcgTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgc < 5:35619‑M2/148‑91 (MQ=255) cAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacct > 1:87222‑M2/1‑50 (MQ=255) aGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaac > 8:115621‑M2/1‑49 (MQ=255) aGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaac < 7:115621‑M2/144‑96 (MQ=255) gACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctgg > 6:35619‑M2/1‑48 (MQ=255) gATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctg < 5:163604‑M2/139‑101 (MQ=255) gATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctg > 6:163604‑M2/1‑39 (MQ=255) ccAACTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacagga < 2:121121‑M2/149‑118 (MQ=255) aaCTACAGCCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatt < 2:91005‑M2/149‑120 (MQ=255) aaCTACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatt < 8:74818‑M2/149‑120 (MQ=255) tACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctgg > 5:42920‑M2/1‑27 (MQ=255) tACAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctgg < 6:42920‑M2/128‑102 (MQ=255) cAACCCGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatttgc > 1:121121‑M2/1‑25 (MQ=255) cccGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatttgcca > 2:25016‑M2/1‑22 (MQ=255) cccGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatttgcca < 1:25016‑M2/146‑125 (MQ=255) cccGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccaatt > 4:66069‑M2/1‑22 (MQ=255) cccGCAGGTAGCGGATGATGATgcagcagcaacgtatggcgttctggcgcatcggccaatt < 3:66069‑M2/61‑40 (MQ=255) atgatgatgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctggctatccagcaacaggatttgccattgctcaccaataaaca > 1:91005‑M2/1‑8 (MQ=255) atgcagcagcaacgtatggcgttctggcgcatcggccagtttacgttccagccactcaagctgaaactcgctcagctcaccgtgcggcacgccaaacacctgcctatccagcaacaggatttgccattgctcaccaataaacacgcgct < 2:191683‑M2/149‑148 (MQ=255) | AGATCCAGCTCCTGATGAATATGACCGCACAGCAAGTATTTGACGTGCGGAAACTTCGCCAGCACGGTATCCAGTTCGCCCGCGTTACGCAGACTGTGTTGATCGAGCCAACTACAACCCGCAGGTAGCGGATGATGATGCAGCAGCAGCAACGTATGGCGTTCTGGCGCATCGGCCAGTTTACGTTCCAGCCACTCAAGCTGAAACTCGCTCAGCTCACCGTGCGGCACGCCAAACACCTGGCTATCCAGCAACAGGATTTGCCATTGCTCACCAATAAACACGC > NC_000913/3176205‑3176490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |