New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1954549 =14 (0.550)4 (0.170) 4/240 2.4 23.4% intergenic (+136/+29) cmoB/torZ tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit
?NC_000913 1954569 = 13 (0.550)intergenic (+156/+9) cmoB/torZ tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit

GCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGG  >  NC_000913/1954407‑1954695
                                                                                                                                              |                                                                                                                                                  
gttaacggcggatatccccagctcgcagctggcaaatgcctgtgccggtaactcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGccc                                                                                                                                              <  2:32162‑M1/7‑1 (MQ=255)
         gTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCggg                                                                                                                                     >  8:65282/1‑149 (MQ=255)
                                                 ggCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCaaa                                                                                             >  8:37477/1‑149 (MQ=255)
                                                    tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTCACGTCTTa                                                                                                                     >  6:36148‑M1/91‑122 (MQ=255)
                                                    tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTCACGTCTTa                                                                                                                     <  5:36148‑M1/32‑1 (MQ=255)
                                                          aaCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTaa                                                                                    <  7:37477/149‑1 (MQ=255)
                                                             cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACtt                                                                                 >  1:32162/1‑149 (MQ=255)
                                                                                          accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTc                                                                                                                             <  1:8627‑M1/24‑1 (MQ=255)
                                                                                          accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTc                                                                                                                             >  2:8627‑M1/53‑76 (MQ=255)
                                                                                           gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGAtata                                                   >  6:115569/1‑149 (MQ=255)
                                                                                               gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                              <  2:109868/86‑1 (MQ=255)
                                                                                               gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGATTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                              >  1:109868/1‑86 (MQ=255)
                                                                                                       aGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                       <  7:65282/149‑1 (MQ=255)
                                                                                                           tAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTa                                   >  1:22970/1‑149 (MQ=255)
                                                                                                                      gCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAgg                         >  3:33129/1‑148 (MQ=255)
                                                                                                                          cTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCAttt                    <  4:33129/149‑1 (MQ=255)
                                                                                                                           tttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTg                   >  1:42953/1‑149 (MQ=255)
                                                                                                                            ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                       <  6:108223/128‑1 (MQ=255)
                                                                                                                            ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                       >  5:108223/1‑128 (MQ=255)
                                                                                                                                              AGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTgggg  >  5:115569‑M1/1‑147 (MQ=255)
                                                                                                                                              |                                                                                                                                                  
GCCGTAAAGGTCTGGTATTACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGG  >  NC_000913/1954407‑1954695

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.