New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1954549 =14 (0.550)4 (0.170) 4/240 2.4 23.4% intergenic (+136/+29) cmoB/torZ tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit
?NC_000913 1954569 = 13 (0.550)intergenic (+156/+9) cmoB/torZ tRNA (cmo5U34)‑carboxymethyltransferase, carboxy‑SAM‑dependent/trimethylamine N‑oxide reductase system III, catalytic subunit

GGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAAC  >  NC_000913/1954456‑1954710
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ggCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCaaa                                                                                                            >  8:37477/1‑149 (MQ=255)
   tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTCACGTCTTa                                                                                                                                    >  6:36148‑M1/91‑122 (MQ=255)
   tcagcgttggtgtatatcgaaaaatatacgggcaatgcaccgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTCACGTCTTa                                                                                                                                    <  5:36148‑M1/32‑1 (MQ=255)
         aaCCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTaa                                                                                                   <  7:37477/149‑1 (MQ=255)
            cTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACtt                                                                                                >  1:32162/1‑149 (MQ=255)
                                         accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTc                                                                                                                                            <  1:8627‑M1/24‑1 (MQ=255)
                                         accgaagttaacggcgtttgatcagccagctgttcaggcgtaagacgtgaatAGCGCCCGTTTCCGGGCGCTATTc                                                                                                                                            >  2:8627‑M1/53‑76 (MQ=255)
                                          gTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGAtata                                                                  >  6:115569/1‑149 (MQ=255)
                                              gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                                             <  2:109868/86‑1 (MQ=255)
                                              gCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGATTCCGGGCGCTATTCACGTCTTACGCCTGa                                                                                                                             >  1:109868/1‑86 (MQ=255)
                                                      aGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  7:65282/149‑1 (MQ=255)
                                                          tAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTa                                                  >  1:22970/1‑149 (MQ=255)
                                                                     gCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAgg                                        >  3:33129/1‑148 (MQ=255)
                                                                         cTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCAttt                                   <  4:33129/149‑1 (MQ=255)
                                                                          tttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTg                                  >  1:42953/1‑149 (MQ=255)
                                                                           ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      >  5:108223/1‑128 (MQ=255)
                                                                           ttACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  6:108223/128‑1 (MQ=255)
                                                                                 taagacgtgaatagcgcccggaaacgggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      <  5:36148‑M2/90‑1 (MQ=255)
                                                                                 taagacgtgaatagcgcccggaaacgggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGa                                                      >  6:36148‑M2/33‑122 (MQ=255)
                                                                                         gaatagcgcccggaaacgggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGt                                                                                            >  2:8627‑M2/25‑76 (MQ=255)
                                                                                         gaatagcgcccggaaacgggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGt                                                                                            <  1:8627‑M2/52‑1 (MQ=255)
                                                                                             AGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTgggg                 >  5:115569‑M1/1‑147 (MQ=255)
                                                                                                          gggcgctATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAac  <  2:32162‑M2/142‑1 (MQ=255)
                                                                                                                 |                                                                                                                                             
GGCCTACAAAACCTTGCTAATTCAATATATTGCAGGGACTATGTAGGCCTGATAAGCATAGCGCATCAGGCAGCTTTACGTTTGCATAACCTCAGCGCCCGTTTCCGGGCGCTATTCACGTCTTACGCCTGAACAGCTGGCTGATCAAACGCCGTTAACTTCGGTGCATTGCCCGTATATTTTTCGATATACACCAACGCTGAGTTACCGGCACAGGCATTTGCCAGCTGCGAGCTGGGGATATCCGCCGTTAAC  >  NC_000913/1954456‑1954710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.